SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16993

Length: 410 nt

UniGene Fasta

>biog3_v1.0_unigene16993
AATGTAGCTTTACGGAAGACACAGTGGTCATTGTCTCAATCGTATTCCTGGTGATCTTGTTCAGCATACAACAGTTTGGTACAAGCAAAGTAGGCATGACATTTGACTCCAGCACTCCTGATANGGTTTTTCTCTCTTGGTTCTATTGGACTTTACAATATTATTTCACATGACGTGTAGTTTTAAGGGCATTCAATCCAGTTTATATCTATACTTTTTCAAGAGGAACACTATCAAAGCATGGATGTCCCTAGGAGGATGCGTGCTGTGCATAACAGGAGCTGAAGCTATGTTTGCTGATTTGGGTCATTTCTCAGTAAGATCCATCCAGATAGCCTTCACATTTGTAGTATTCCCATGCCTGCTATTGGCTTACATGGGTCAAGCTGCATATCTTATGAAGCATCCAG

Ace file of the UniGene biog3_v1.0_unigene16993

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene264	1/2
SustainPine v2.0	sp_v2.0_unigene10646	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9T7V7_RICCO	-	-	65%
FL-Next	sp=Potassium transporter 23; Oryza sativa subsp. japonica (Rice).	-	-	41%
Blast2go	potassium transporter	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6H4R6

Fln msg: Overlapping hits, possible frame ERROR between 218 and 203, Distance to subject end: 445 aas, your sequence is shorter than subject: 136 - 877

Fln protein: CSFTEDTVVIVSIVFLVILFSIQQFGTSKVGMTFDSSTPDKVFLSWFYWTLQYYFT*RVVLRAFNPxxxxxxxKRNTIKAWMSLGGCVLCITGAEAMFADLGHFSVRSIQIAFTFVVFPCLLLAYMGQAAYLMKHP

Protein Length: 137

Fln nts: AATGTAGCTTTACGGAAGACACAGTGGTCATTGTCTCAATCGTATTCCTGGTGATCTTGTTCAGCATACAACAGTTTGGTACAAGCAAAGTAGGCATGACATTTGACTCCAGCACTCCTGATAaGGTTTTTCTCTCTTGGTTCTATTGGACTTTACAATATTATTTCACATGACGTGTAGTTTTAAGGGCATTCAATCCAxxxxxxxxxxxxxxxxxxxxxAAGAGGAACACTATCAAAGCATGGATGTCCCTAGGAGGATGCGTGCTGTGCATAACAGGAGCTGAAGCTATGTTTGCTGATTTGGGTCATTTCTCAGTAAGATCCATCCAGATAGCCTTCACATTTGTAGTATTCCCATGCCTGCTATTGGCTTACATGGGTCAAGCTGCATATCTTATGAAGCATCCAG

Fln Alignment:

biogeco3_mira_c13365___QQFGTSKVGMTFDSSTPDKVFLSWFY--WTLQYYFT*RV---VLRAFNPxxxxxxFKRNTIKAWMSLGGCVLCITGAEAMFADLGHFSVRSIQIAFTFVVFPCLLLAYMGQAAYLMKHP
Q6H4R6__________________QRFGTGKVGFMFAP-----ILALWFINLGTIGIYNLAKYDISVVRAFNPxxxxxxFQTNGIKAWSALGGCVLCITGAEAMFADLGHFSVKSIQVAFTAVVFPCLLIAYMGQAAYLMKYP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain