SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16948

Length: 240 nt

UniGene Fasta

>biog3_v1.0_unigene16948
AATGTCTCTTAAGGAAGGCCGAAAGATCAAACTGCTCAACCAGGCCCTCAAGGCTCAGCAACGCAGCTCCTTCAAGAATTCTTTCCGCGACGAGCGCAGGAAGCTGATCCAGGCTATTGACGAATACTGTGGCGACGATCCTCTGAAGCCATGGATCGAGTGTATCAAGTGGGTTCGAGAATCTTTTCCTTCAGGTGGAGATCAGTCAGGATTGTTATCAATATGTGAACAATGTGTACG

Ace file of the UniGene biog3_v1.0_unigene16948

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1341	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	checkpoint serine/threonine-protein kinase [Arabidopsis thaliana] gb\|AAB80673.2\| expressed protein [Arabidopsis thaliana] gb\|AEC08852.1\| checkpoint serine/threonine-protein kinase [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	checkpoint serine threonine-protein kinase	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	mitotic cell cycle spindle assembly checkpoint	GO:0007094	Biological Process	63%
Blast2go	kinetochore	GO:0000776	Cellular Component	63%
Blast2go	chromocenter	GO:0010369	Cellular Component	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mad3/BUB1 homology region 1	IPR013212	-	0.0	-
Sma3	Mitotic checkpoint serine/threonine protein kinase, Bub1	IPR015661	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7UDG7

Fln msg: Distance to subject end: 270 aas, your sequence is shorter than subject: 79 - 381

Fln protein: MSLKEGRKIKLLNQALKAQQRSSFKNSFRDERRKLIQAIDEYCGDDPLKPWIECIKWVRESFPSGGDQSGLLSICEQCV

Protein Length: 80

Fln nts: AATGTCTCTTAAGGAAGGCCGAAAGATCAAACTGCTCAACCAGGCCCTCAAGGCTCAGCAACGCAGCTCCTTCAAGAATTCTTTCCGCGACGAGCGCAGGAAGCTGATCCAGGCTATTGACGAATACTGTGGCGACGATCCTCTGAAGCCATGGATCGAGTGTATCAAGTGGGTTCGAGAATCTTTTCCTTCAGGTGGAGATCAGTCAGGATTGTTATCAATATGTGAACAATGTGTACG

Fln Alignment:

biogeco3_mira_c13300___LKEGRKIKLLNQALKAQQRSSFKNSFRDERRKLIQAIDEYCGDDPLKPWIECIKWVRESFPSGGDQSGLLSICEQC
D7UDG7__________________LKRGRNIHLLNNALKAQTDNQLKHSLLENRRKLIQAIDEYQGDDPLQPWIRCIKWVQEAFPPGGDYSGLVVIYEQC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain