SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16929

Length: 244 nt

UniGene Fasta

>biog3_v1.0_unigene16929
AAGAAATTGAAGAGATTGTGGGTTTGGACTGTAGTGAGGCAATTTTCTGCTCAGCTAAGGAAGGCATAGGTGTACATGAAATTTTGGAGGCTATAGTGAAGAAGGTACCTCCACCCCAAGATAATGCTGACAAGCCTTTGAGGGCGCTTATATTTGACAGCTATTATGACACTTATAGAGGCGTGGTTGTATATTTTCGTGTTATTGATGGCACCATCAAGAAAGGCGACAAAGTGTTATTCAT

Ace file of the UniGene biog3_v1.0_unigene16929

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9281	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative LepA protein [Oryza sativa Japonica Group] dbj\|BAD28168.1\| putative LepA protein [Oryza sativa Japonica Group]	-	-	75%
FL-Next	sp=Translation factor GUF1 homolog, chloroplastic; Vitis vinifera (Grape).	-	-	78%
Blast2go	gtp-binding protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	translational elongation	GO:0006414	Biological Process	90%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	90%
Blast2go	positive regulation of translation	GO:0045727	Biological Process	90%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	90%
Blast2go	ribosome binding	GO:0043022	Molecular Function	90%
Blast2go	GTPase activity	GO:0003924	Molecular Function	90%
Blast2go	GTP binding	GO:0005525	Molecular Function	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Elongation factor 4	IPR006297	-	-
Sma3	GTP-binding protein LepA, C-terminal	IPR013842	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A5B4D2

Fln msg: Distance to subject end: 374 aas, your sequence is shorter than subject: 80 - 680

Fln protein: EIEEIVGLDCSEAIFCSAKEGIGVHEILEAIVKKVPPPQDNADKPLRALIFDSYYDTYRGVVVYFRVIDGTIKKGDKVLF

Protein Length: 81

Fln nts: AAGAAATTGAAGAGATTGTGGGTTTGGACTGTAGTGAGGCAATTTTCTGCTCAGCTAAGGAAGGCATAGGTGTACATGAAATTTTGGAGGCTATAGTGAAGAAGGTACCTCCACCCCAAGATAATGCTGACAAGCCTTTGAGGGCGCTTATATTTGACAGCTATTATGACACTTATAGAGGCGTGGTTGTATATTTTCGTGTTATTGATGGCACCATCAAGAAAGGCGACAAAGTGTTATTCAT

Fln Alignment:

biogeco3_mira_c13270___EIEEIVGLDCSEAIFCSAKEGIGVHEILEAIVKKVPPPQDNADKPLRALIFDSYYDTYRGVVVYFRVIDGTIKKGDKVLF
A5B4D2__________________EIEEVVGLDCSDAIHCSAKEGIGITEILNAIVKRIPPPCDTAERPLRALIFDSYYDPYRGVIVYFRVIDGTIKKGDRIYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain