SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16927

Length: 258 nt

UniGene Fasta

>biog3_v1.0_unigene16927
AATGTATGTTTGCCGAAGGGCCCCCGTACTTCTACTTTGAGAATGTTGCCAGTACACCAAAGGGTGTTTGGGAAACTATATCTCGGTTTCTGTATGATATTGAGCCCGAGTTCGTAGACGCGAAGTATTTTTCTGTTTCTAGTAGAAAACGTGGTTATGTACATAACCTCCCAATCGAGAACCGCTTTCGGGTTATGCCTTTGCCGCCTTTGACAATACATGAGGCATTTCCTGATACACGGAAGTATTGGCCTTCTT

Ace file of the UniGene biog3_v1.0_unigene16927

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3936	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA methyltransferase [Nicotiana tabacum]	-	-	60%
FL-Next	sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	dna (cytosine-5)-methyltransferase drm2	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Tetracycline biosynthesis	00253	73%
Blast2go	Histidine metabolism	00340	73%
Blast2go	Tyrosine metabolism	00350	73%
Blast2go	Phenylalanine metabolism	00360	73%
Blast2go	Tryptophan metabolism	00380	73%
Blast2go	Benzoxazinoid biosynthesis	00402	73%
Blast2go	Selenocompound metabolism	00450	73%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	73%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	73%
Blast2go	Methane metabolism	00680	73%
Blast2go	Porphyrin and chlorophyll metabolism	00860	73%
Blast2go	Carotenoid biosynthesis	00906	73%
Blast2go	Phenylpropanoid biosynthesis	00940	73%
Blast2go	Flavonoid biosynthesis	00941	73%
Blast2go	Anthocyanin biosynthesis	00942	73%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	73%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	73%
Blast2go	Insect hormone biosynthesis	00981	73%
Blast2go	Biosynthesis of type II polyketide products	01057	73%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	DNA methylation	GO:0006306	Biological Process	73%
Blast2go	gene silencing	GO:0016458	Biological Process	73%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	YTH domain	IPR007275	-	-
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M548

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 85 - 626

Fln protein: CMFAEGPPYFYFENVASTPKGVWETISRFLYDIEPEFVDAKYFSVSSRKRGYVHNLPIENRFRVMPLPPLTIHEAFPDTRKYWPS

Protein Length: 86

Fln nts: AATGTATGTTTGCCGAAGGGCCCCCGTACTTCTACTTTGAGAATGTTGCCAGTACACCAAAGGGTGTTTGGGAAACTATATCTCGGTTTCTGTATGATATTGAGCCCGAGTTCGTAGACGCGAAGTATTTTTCTGTTTCTAGTAGAAAACGTGGTTATGTACATAACCTCCCAATCGAGAACCGCTTTCGGGTTATGCCTTTGCCGCCTTTGACAATACATGAGGCATTTCCTGATACACGGAAGTATTGGCCTTCTT

Fln Alignment:

biogeco3_mira_c13267___AEGPPYFYFENVASTPKGVWETISRFLYDIEPEFVDAKYFSVSSRKRGYVHNLPIENRFRVMPLPPLTIHEAFPDTRKYWP
Q9M548__________________ARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLPINNRFQIQPPPKYTIHDAFPLSKRWWP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain