SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16805

Length: 185 nt

UniGene Fasta

>biog3_v1.0_unigene16805
CAGAGGAGGCCTTATATGCATCTGAAGAAACAGAGAAAATGGTTGATGAGCTCACCCTAGAGCTGATTGCAACAAAGGCTCTTTGGATATGGCTCATGCTACACACCAAGAGGCAGAGGAACATCGCTTGGCTGCTTCAATGGCCAAAGAGCAAGAGGTTGAGGAGAGAGCTAAGGAAATGAAGA

Ace file of the UniGene biog3_v1.0_unigene16805

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18113	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Paramyosin, putative n=1 Tax=Ricinus communis RepID=B9R7C9_RICCO	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	64%
Blast2go	uncharacterized protein	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast accumulation movement	GO:0009904	Biological Process	63%
Blast2go	chloroplast avoidance movement	GO:0009903	Biological Process	63%
Blast2go	protein binding	GO:0005515	Molecular Function	63%
Blast2go	cytosol	GO:0005829	Cellular Component	63%
Blast2go	plasma membrane	GO:0005886	Cellular Component	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF827, plant	IPR008545	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C0HG95

Fln msg: Overlapping hits, possible frame ERROR between 77 and 71, Distance to subject end: 413 aas, your sequence is shorter than subject: 61 - 784

Fln protein: EEALYASEETEKMVDELTLELIxxxxSLDMAHATHQEAEEHRLAASMAKEQEVEERAKEMK

Protein Length: 62

Fln nts: CAGAGGAGGCCTTATATGCATCTGAAGAAACAGAGAAAATGGTTGATGAGCTCACCCTAGAGCTGATTxxxxxxxxxxxxTCTTTGGATATGGCTCATGCTACACACCAAGAGGCAGAGGAACATCGCTTGGCTGCTTCAATGGCCAAAGAGCAAGAGGTTGAGGAGAGAGCTAAGGAAATGAAGA

Fln Alignment:

biogeco3_mira_c13084___EEALYASEETEKMVDELTLELIAxxGSLDMAHATHQEAEEHRLAASMAKEQEVEERAKEMK
C0HG95__________________EEVVCAAKDTEKQVEELTLELIAxxESLELAHASHHEAEEHRLGAAMAKEQDFLAWEKELE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain