SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16727

Length: 415 nt

UniGene Fasta

>biog3_v1.0_unigene16727
AATGTCTTGAAAACGTGATTCAGACATGTCGACCAGCGGATTCGAAGTCGGGTCGGATCACCTCTGCTACGTTCACTGCGACTATTGCAACACAATCCTCGCGGTAAACGTTCCATGCAACAGCTTATACAGGACTGTTACAGTCCGATGCGGTCATTGCAATAACCTCCTGTCGGTAAACATGGCGCCCTTGTTGCAGTCGCTCCCACAAGACCCGCAGCAGCAAGGGCAGAACACTGGTACGTACGATTACAATCGGGATCCGGCATCTTCATCTACTGCAAATAGGGATGCATCTTATTTAGAAAACGAAGAAGCGAGGATGTCATCTTACAGACAACCCGAGAAAAAACAGCGCGTTCCATCTGCATATAATCGTTTCATTAGAGATGAAATCCAGAGGATCAAAGACATT

Ace file of the UniGene biog3_v1.0_unigene16727

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2388	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	YAB5-like YABBY protein (Fragment) n=2 Tax=Cabomba caroliniana RepID=E9RFE5_CABCA	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	yabby2 like protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	YABBY protein	IPR006780	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NY99

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 130 - 180

Fln protein: MSTSGFEVGSDHLCYVHCDYCNTILAVNVPCNSLYRTVTVRCGHCNNLLSVNMAPLLQSLPQDPQQQGQNTGTYDYNRDPASSSTANRDASYLENEEARMSSYRQPEKKQRVPSAYNRFIRDEIQRIKDI

Protein Length: 131

Fln nts: AATGTCTTGAAAACGTGATTCAGAC_-_ATGTCGACCAGCGGATTCGAAGTCGGGTCGGATCACCTCTGCTACGTTCACTGCGACTATTGCAACACAATCCTCGCGGTAAACGTTCCATGCAACAGCTTATACAGGACTGTTACAGTCCGATGCGGTCATTGCAATAACCTCCTGTCGGTAAACATGGCGCCCTTGTTGCAGTCGCTCCCACAAGACCCGCAGCAGCAAGGGCAGAACACTGGTACGTACGATTACAATCGGGATCCGGCATCTTCATCTACTGCAAATAGGGATGCATCTTATTTAGAAAACGAAGAAGCGAGGATGTCATCTTACAGACAACCCGAGAAAAAACAGCGCGTTCCATCTGCATATAATCGTTTCATTAGAGATGAAATCCAGAGGATCAAAGACATT

Fln Alignment:

biogeco3_mira_c12977___MSTSGFEVGSDHLCYVHCDYCNTILAVNVPCNSLYRTVTVRCGHCNNLLSVNMAXXXXXXXXXXXXXXXNTGTYDYNRDPASSSTANRDASYLENEEARMSSYRQPEKKQRVPSAYNRFIRDEIQRIK
A9NY99__________________MSTSGFEVGQDHLCYVHCDFCSTILAVNVPCNSLYRIVTVRCGHCTNLLSVNMAPLLQSLPQQAQQQGPNTGPHDYTRDPASSSTAINDA-YPDNEETRIPSYRQPEKKQRVPSAYNRFIRDEIQRIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain