SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16703

Length: 479 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16703
ACGTTTAAAAATTCCGGAGATCGTGTAACTTGAAGCCAAGGTCCGGCGTTCGAAACCCTGGGAAATGTACAGTGACTTTTCGCCCGTCGGCTCCTGCGATGAAATCGAAAGATTAAGTTAAAGGATGAAATTTCTGAGTTAAATGTGGAGAATGTCAGTCTGGACTCAGCTTGACAGGGAAATTTAGGCAGATTTTAGCTTGGCAGACCCATGGCTCTACTCACCTGGCTCTGCTTGGCTGGTCTTTACGCTGCGGTCCATGGCCAGTACTTATATGATACCGTGTTTAACATTGATTGTGGCGGATATAAGAATTTCACAAATCAGTTCAATCAGTCATGGATATCAGATAGATTCTATACTGGAGGTGCACCGGGACTTGTTTCAGAACCTCACATTTTTGAACAGGAACAAGAGAAAACGTTGCGGTTCTTCCCTATTGCAATGGGGAAAAAGAATTGCTATACAGTCAATACATT

Ace file of the UniGene biog3_v1.0_unigene16703 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10670	1/2
SustainPine v2.0	sp_v2.0_unigene33354	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana] gb\|AEE30643.1\| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7T992

Fln msg: Distance to subject end: 535 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 89 - 630

Fln protein: MALLTWLCLAGLYAAVHGQYLYDTVFNIDCGGYKNFTNQFNQSWISDRFYTGGAPGLVSEPHIFEQEQEKTLRFFPIAMGKKNCYTVNT

Protein Length: 90

Fln nts: ACGTTTAAAAATTCCGGAGATCGTGTAACTTGAAGCCAAGGTCCGGCGTTCGAAACCCTGGGAAATGTACAGTGACTTTTCGCCCGTCGGCTCCTGCGATGAAATCGAAAGATTAAGTTAAAGGATGAAATTTCTGAGTTAAATGTGGAGAATGTCAGTCTGGACTCAGCTTGACAGGGAAATTTAGGCAGATTTTAGCTTGGCAGACCC_-_ATGGCTCTACTCACCTGGCTCTGCTTGGCTGGTCTTTACGCTGCGGTCCATGGCCAGTACTTATATGATACCGTGTTTAACATTGATTGTGGCGGATATAAGAATTTCACAAATCAGTTCAATCAGTCATGGATATCAGATAGATTCTATACTGGAGGTGCACCGGGACTTGTTTCAGAACCTCACATTTTTGAACAGGAACAAGAGAAAACGTTGCGGTTCTTCCCTATTGCAATGGGGAAAAAGAATTGCTATACAGTCAATACATT

Fln Alignment:

biogeco3_mira_c12941___QYLYDTVFNIDCGGYKNFTNQFNQSWISDRFYTGGAPGLVSEPHIFEQEQEKTLRFFPIAMGKKNCYTVN
D7T992__________________QYPFNVSYNIDCGGSTNSVDQFNRTWLSDRNYTGGSTGLVSEPLHFHPLQEKTIRFFPLSSGKKNCYIVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain