SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16688

Length: 231 nt

UniGene Fasta

>biog3_v1.0_unigene16688
AATGTGGCTATGTCTGCTTATGTTTTACAATCTCTATGAGGGGAAGAGTAGGAGTGAATTTGAGACAGAACTGCGTGAGCGTTTTGGCTTGCTTGTTAAGATGCCTTTGTTGAAATCTGACAGGGTTCCTTTGCCTGATTCAATTAAAGGTATCTTGGATGAAGGGCTCAGTTTATACAAGCTTCACACTAACAGGCATGGAAAATTGGACTGTGCTAAGGGTTCCTATGC

Ace file of the UniGene biog3_v1.0_unigene16688

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35768	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA ligase isoform 1 [Triticum aestivum]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	73%
Blast2go	rna ligase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	2',3'-cyclic-nucleotide 3'-phosphodiesterase.	EC:3.1.4.37	-	0.0	81%
Blast2go	RNA ligase (ATP).	EC:6.5.1.3	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	tRNA splicing, via endonucleolytic cleavage and ligation	GO:0006388	Biological Process	81%
Blast2go	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity	GO:0004113	Molecular Function	81%
Blast2go	RNA ligase (ATP) activity	GO:0003972	Molecular Function	81%
Blast2go	polynucleotide 5'-hydroxyl-kinase activity	GO:0051731	Molecular Function	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SK42

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 76 - 1073

Fln protein: MWLCLLMFYNLYEGKSRSEFETELRERFGLLVKMPLLKSDRVPLPDSIKGILDEGLSLYKLHTNRHGKLDCAKGSY

Protein Length: 77

Fln nts: AATGTGGCTATGTCTGCTTATGTTTTACAATCTCTATGAGGGGAAGAGTAGGAGTGAATTTGAGACAGAACTGCGTGAGCGTTTTGGCTTGCTTGTTAAGATGCCTTTGTTGAAATCTGACAGGGTTCCTTTGCCTGATTCAATTAAAGGTATCTTGGATGAAGGGCTCAGTTTATACAAGCTTCACACTAACAGGCATGGAAAATTGGACTGTGCTAAGGGTTCCTATGC

Fln Alignment:

biogeco3_mira_c12917___LLMFYNLYEGKSRSEFETELRERFGLLVKMPLLKSDRVPLPDSIKGILDEGLSLYKLHTNRHGKLDCAKGSY
B9SK42__________________LLMFYHLYDGKSRKEFESELIERFGSLVKMPLLKSDRSPLPDPVRSILEEGINLYRLHTNRHGRLESTKGSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain