SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16667

Length: 267 nt

UniGene Fasta

>biog3_v1.0_unigene16667
CTGTCATTTTCTTTGCGTGATGATGCCAGTGATGTGCGCAGAAGAGCTTTAGGAGGCCTCAAGTCTGTTGCAAAGGTGAATGCTCTCACTGTTATTTCATACCTCCCTACCTTGGGACCAGCGATTGCAGAATGTCTGAGGGATGCAAGCACACCTGTACGACTTGCTGCAGAACGCTGTGCTCTGCATGTTTTCCAGCTAACAAAAGGCATGGAAAATGTCCAAGCTGCGCAAAAGTATATCACTGGTCTTGATGCTAGACACATT

Ace file of the UniGene biog3_v1.0_unigene16667

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2037	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative translational activator [Oryza sativa Japonica Group]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	67%
Blast2go	translational activator gcn1	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	85%
Blast2go	binding	GO:0005488	Molecular Function	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%
Blast2go	cytosol	GO:0005829	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Plant self-incompatibility S1	IPR010264	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C1T3

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 89 - 720

Fln protein: LSFSLRDDASDVRRRALGGLKSVAKVNALTVISYLPTLGPAIAECLRDASTPVRLAAERCALHVFQLTKGMENVQAAQKYITGLDARHI

Protein Length: 90

Fln nts: CTGTCATTTTCTTTGCGTGATGATGCCAGTGATGTGCGCAGAAGAGCTTTAGGAGGCCTCAAGTCTGTTGCAAAGGTGAATGCTCTCACTGTTATTTCATACCTCCCTACCTTGGGACCAGCGATTGCAGAATGTCTGAGGGATGCAAGCACACCTGTACGACTTGCTGCAGAACGCTGTGCTCTGCATGTTTTCCAGCTAACAAAAGGCATGGAAAATGTCCAAGCTGCGCAAAAGTATATCACTGGTCTTGATGCTAGACACATT

Fln Alignment:

biogeco3_mira_c12892___SLRDDASDVRRRALGGLKSVAKVNALTVISYLPTLGPAIAECLRDASTPVRLAAERCALHVFQLTKGMENVQAAQKYITGLDARHI
A5C1T3__________________ALQDDSSEVRRRALSALKAVAKANPSALMTHITIFGPALAECLKDGNTPVRLAAERCALHAFQLTKGTENVQAAQKFITGLDARRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain