SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16620

Length: 210 nt

UniGene Fasta

>biog3_v1.0_unigene16620
AATGTGATCGAATCGCCACATATTTTGTCAAATGGCTGGGGAAGAGCACTCTAGGGCTTTCCTACGGGTTGACTATAAGCGAAGCTCTCATTGCCCCAGCAATGCCCAGTACTACTGCTAGAGCCGGGTGTGTGTTCTTGCCCATTATCAAGTCCTTGTCTCTCTCCGGAGGTAGTTTGCCCAACGATAAGTCGTCGAAGAAACTCGGTT

Ace file of the UniGene biog3_v1.0_unigene16620

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23240	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate/malate translocator n=1 Tax=Populus trichocarpa RepID=B9IJD2_POPTR	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	2-oxoglutarate malate translocator	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	88%
Blast2go	transport	GO:0006810	Biological Process	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/sulphate symporter	IPR001898	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVU0

Fln msg: Distance to subject end: 300 aas, your sequence is shorter than subject: 69 - 594

Fln protein: CDRIATYFVKWLGKSTLGLSYGLTISEALIAPAMPSTTARAGCVFLPIIKSLSLSGGSLPNDKSSKKLG

Protein Length: 70

Fln nts: AATGTGATCGAATCGCCACATATTTTGTCAAATGGCTGGGGAAGAGCACTCTAGGGCTTTCCTACGGGTTGACTATAAGCGAAGCTCTCATTGCCCCAGCAATGCCCAGTACTACTGCTAGAGCCGGGTGTGTGTTCTTGCCCATTATCAAGTCCTTGTCTCTCTCCGGAGGTAGTTTGCCCAACGATAAGTCGTCGAAGAAACTCGGTT

Fln Alignment:

biogeco3_mira_c12823___DRIATYFVKWLGKSTLGLSYGLTISEALIAPAMPSTTARAGCVFLPIIKXXXXXXXXXPNDKSSKKLG
A9NVU0__________________NRVAYQFVALFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEGRLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain