SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16611

Length: 346 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16611
GAGCTCATTATTCGGTTGCATCGCCTTCTTGGAAATCGGTGGTCTCTGATAGCCGGACGACTGCCTGGTCGAACAGACAACGAAATCAAGAATTACTGGAACACTCATATGAGCAAGAAGCCATGCCTGTCCATGAACGAATCTCAGCCCAATACTTCGCAAAATCTCAAAACGAGGTTAAAATCTCCGGCTCCTGTCCAAAATCGTGTGTTCAAAACCACCGCCCTGAAAATAAATCCGGCAGCGAGATTCTCTGGAACGGTAAGAGCAGGTGGCTACAGCGGTGATGGCTGCAGTAATCGTATATCAAATGAAGACTTCAATTACAGTAATGTTAAAGAACATT

Ace file of the UniGene biog3_v1.0_unigene16611 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8090	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DcMYB3-1 [Daucus carota]	-	-	1.99993e-41	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	transcription factor tt2-like	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	71%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Myb-related protein P, C-terminal	IPR010588	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 115 - 392

Fln protein: ELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHMSKKPCLSMNESQPNTSQNLKTRLKSPAPVQNRVFKTTALKINPAARFSGTVRAGGYSGDGCSNRISNEDFNYSNVKEH

Protein Length: 116

Fln nts: GAGCTCATTATTCGGTTGCATCGCCTTCTTGGAAATCGGTGGTCTCTGATAGCCGGACGACTGCCTGGTCGAACAGACAACGAAATCAAGAATTACTGGAACACTCATATGAGCAAGAAGCCATGCCTGTCCATGAACGAATCTCAGCCCAATACTTCGCAAAATCTCAAAACGAGGTTAAAATCTCCGGCTCCTGTCCAAAATCGTGTGTTCAAAACCACCGCCCTGAAAATAAATCCGGCAGCGAGATTCTCTGGAACGGTAAGAGCAGGTGGCTACAGCGGTGATGGCTGCAGTAATCGTATATCAAATGAAGACTTCAATTACAGTAATGTTAAAGAACATT

Fln Alignment:

biogeco3_mira_c12807___ELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHMSKKPCLSMNESQPNTSQNLKTRLKSPA------------PVQNRVFKTTALKINPAARFSGTVRAGGYSGDGCSNRISNEDFNYSNVKE
B8LMJ6__________________ELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKK--LSLNESQHKTSQNLISSSKSPLPVQTRVFKASPFPVQTRVFKATAVKITTAVRHSDIIRPNGYNGDDCSNCISGKALKLCNVKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain