SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16605

Length: 235 nt

UniGene Fasta

>biog3_v1.0_unigene16605
CAAGGGCGATATTCCATCTACAGTTTCACTTGTAGTGGTTTTCAACAAGGGAGTGGTGGATCAGTGTTTGAAGTTGTACAATGACATGATGTCAAGTGTGAGCTTACCTCTTTCTGAGGATCTGTTCAGAGAAGTGCATGAGGAATCAAAGACGAAAGTAATGGGTGTATTTGAAGAACAGCGTTTTGGCCGACACCATGCAAAAACATCAGTAGAGAGCTTGAGTCTGAAATTC

Ace file of the UniGene biog3_v1.0_unigene16605

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10582	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative guanylate binding protein [Oryza sativa Japonica Group]	-	-	70%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	60%
Blast2go	guanylate-binding protein 4-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	immune response	GO:0006955	Biological Process	85%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	85%
Blast2go	GTPase activity	GO:0003924	Molecular Function	85%
Blast2go	GTP binding	GO:0005525	Molecular Function	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%
Blast2go	endomembrane system	GO:0012505	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Guanylate-binding protein, N-terminal	IPR015894	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H8G1

Fln msg: Distance to subject end: 210 aas, your sequence is shorter than subject: 78 - 663

Fln protein: KGDIPSTVSLVVVFNKGVVDQCLKLYNDMMSSVSLPLSEDLFREVHEESKTKVMGVFEEQRFGRHHAKTSVESLSLKF

Protein Length: 79

Fln nts: CAAGGGCGATATTCCATCTACAGTTTCACTTGTAGTGGTTTTCAACAAGGGAGTGGTGGATCAGTGTTTGAAGTTGTACAATGACATGATGTCAAGTGTGAGCTTACCTCTTTCTGAGGATCTGTTCAGAGAAGTGCATGAGGAATCAAAGACGAAAGTAATGGGTGTATTTGAAGAACAGCGTTTTGGCCGACACCATGCAAAAACATCAGTAGAGAGCTTGAGTCTGAAATTC

Fln Alignment:

biogeco3_mira_c12798___KGDIPSTVSLVVVFNKGVVDQCLKLYNDMMSSVSLPLSEDLFREVHEESKTKVMGVFEEQRFGRHHAKTSVESL
B9H8G1__________________KGEIPSTGSLVEVFNKGILERCLKLYSEMMAKLPLPLSEKSLQNVHENSKGEAMKSFDEQHFGRHHAKRSVMQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain