SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16574

Length: 214 nt

UniGene Fasta

>biog3_v1.0_unigene16574
AATGTGATGTCTCTCTCTCTGGGAATGAAATCACAGTGGTGGTCTCTTCTCCCGCCATGGCAAAGGAAGTTCTCAATGTCCATGACCACATCTTTGCAGGCCGGATTGTGAACCAAGTAGGCAGGTCTCTTTCCCATCACAAGTCCTCACTTGTTTTGAGATTGCGGGGTTCGTGATACCCAAACTACAGTCGTGTACTGGTTAATGTGTGGGG

Ace file of the UniGene biog3_v1.0_unigene16574

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10776	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SRM4_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	cytochrome p450	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	64%
Blast2go	heme binding	GO:0020037	Molecular Function	64%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	64%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	64%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 372 aas, your sequence is shorter than subject: 58 - 512

Fln protein: CDVSLSGNEITVVVSSPAMAKEVLNVHDHIFAGRIVNQVGRSLSHHKSSLVLRLRGS*

Protein Length: 59

Fln nts: AATGTGATGTCTCTCTCTCTGGGAATGAAATCACAGTGGTGGTCTCTTCTCCCGCCATGGCAAAGGAAGTTCTCAATGTCCATGACCACATCTTTGCAGGCCGGATTGTGAACCAAGTAGGCAGGTCTCTTTCCCATCACAAGTCCTCACTTGTTTTGAGATTGCGGGGTTCGTGATACCCAAACTACAGTCGTGTACTGGTTAATGTGTGGGG

Fln Alignment:

biogeco3_mira_c12759___VSLS-GNEITVVVSSPAMAKEVLNVHDHIFAGRIVNQVGRSLSHHKSSLVLRLRGS*YPNYSRV
B8LPD9__________________MSLSLGMKTTVVVSSPSMAKEVLKTHGHVFAGRIVTQAARSLSHDKSSFLLCQYGSRWRTLRRI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain