SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16572

Length: 227 nt

UniGene Fasta

>biog3_v1.0_unigene16572
AATGTATTCGTCTGTTTTAACCGGAGCTGTTCTTGTACTTTCCACCCTGGTATCAATTGCAACTGTTGACAGGTTGGGCCGCAGAACCTTGTTTTTTGGTGGTGGTATTCTGATGATATCATGTCAGGTTGCTGTTGGCATAATCTTGAGCGTAAAGTTCGGAGGAAACAAACAACTATCCAAAGGCTTTTCAGCATTGGTGGTAACAGTTATCTGTTTATTACATT

Ace file of the UniGene biog3_v1.0_unigene16572

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19507	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar carrier protein A n=6 Tax=Andropogoneae RepID=B6TMZ9_MAIZE	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	hexose transporter	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	0.0	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB82

Fln msg: Distance to subject end: 116 aas, your sequence is shorter than subject: 75 - 226

Fln protein: MYSSVLTGAVLVLSTLVSIATVDRLGRRTLFFGGGILMISCQVAVGIILSVKFGGNKQLSKGFSALVVTVICLLH

Protein Length: 76

Fln nts: AATGTATTCGTCTGTTTTAACCGGAGCTGTTCTTGTACTTTCCACCCTGGTATCAATTGCAACTGTTGACAGGTTGGGCCGCAGAACCTTGTTTTTTGGTGGTGGTATTCTGATGATATCATGTCAGGTTGCTGTTGGCATAATCTTGAGCGTAAAGTTCGGAGGAAACAAACAACTATCCAAAGGCTTTTCAGCATTGGTGGTAACAGTTATCTGTTTATTACATT

Fln Alignment:

biogeco3_mira_c12756___MYSSVLTGAVLVLSTLVSIATVDXXXXXXXXXXXXILMISCQVAVGIILSVKFGGNKQLSKGFSALVVTVICL
D5AB82__________________LYSSVLTGAVLVLSTLVSIATVDRWGRRPLLLAGGIQMIVCQVAVGIILGLKFGGDKQLSKGFSALLVTAICL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain