SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16501

Length: 247 nt

UniGene Fasta

>biog3_v1.0_unigene16501
TTTGGGTGGAAACAATTTCACTGGATGCATTGTAGAAGAGGCCATTGCAAATTTAGCTCAGCTGCAGTACCTGCATCTAGGTTCAAATAGGCTCATCGGTGGCATACCAAAAGCCATTGCAAAATTGAGTGAGTTGACGTCTATATATCTGGGAAGCAACATGTTAACCGGGAACATACCTGAAGGCATTTGTCATTTGACTAAGCTTCAGAATCTTTTCTTAGATACCAACCGTCTCACAGGTACA

Ace file of the UniGene biog3_v1.0_unigene16501

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37513	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG4886 Leucine-rich repeat (LRR) protein	-	-	2.0e-12	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	receptor-like protein kinase	-	-	4.6122e-26	61%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 82 - 818

Fln protein: LGGNNFTGCIVEEAIANLAQLQYLHLGSNRLIGGIPKAIAKLSELTSIYLGSNMLTGNIPEGICHLTKLQNLFLDTNRLTGT

Protein Length: 83

Fln nts: TTTGGGTGGAAACAATTTCACTGGATGCATTGTAGAAGAGGCCATTGCAAATTTAGCTCAGCTGCAGTACCTGCATCTAGGTTCAAATAGGCTCATCGGTGGCATACCAAAAGCCATTGCAAAATTGAGTGAGTTGACGTCTATATATCTGGGAAGCAACATGTTAACCGGGAACATACCTGAAGGCATTTGTCATTTGACTAAGCTTCAGAATCTTTTCTTAGATACCAACCGTCTCACAGGTACA

Fln Alignment:

biogeco3_mira_c12661___LGGNNFTGCIVEEAIANLAQLQYLHLGSNRLIGGIPKAIAKLSELTSIYLGSNMLTGNIPEGICHLTKLQNLFLDTNRLTG
B8LQX6__________________LGKNYLTGSI-PEAIGNLSQLTSLSLHQNNFTGGIPEAIGNLIQLTSLILNQNNFTGGIPEAIGNLSQLTSLTLNQNNFTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain