SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16406

Length: 225 nt

UniGene Fasta

>biog3_v1.0_unigene16406
AATGTAGGATCATTTATTAATATTTCAGCAGTGGGAGGATCTTCTTCCAGCGGCCATTCTATCTTGCAGTTTTCGCCGCTGCAGAGTACCGTGGACGAGGGTTTCTGGAGAAAATTAGCTGACCTAAAGCTCGAGGTCCTCGGCATCTCTGAAAATCCGCTCGACATCACAGGGTTCTATGCTCCAATGTTTCATGAACAGGTGTCAAATCATCTGAAATTGCTT

Ace file of the UniGene biog3_v1.0_unigene16406

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28218	1/2
SustainPine v2.0	sp_v2.0_unigene34820	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-like modifier-activating enzyme atg7 [Arabidopsis thaliana] sp\|Q94CD5.1\|ATG7_ARATH RecName: Full=Ubiquitin-like modifier-activating enzyme atg7; AltName: Full=ATG12-activating enzyme E1 atg7; AltName: Full=Autophagy-related protein 7; Short=AtAP	-	-	57%
FL-Next	sp=Ubiquitin-like modifier-activating enzyme atg7; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	ubiquitin-like modifier-activating enzyme atg7-like	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	E1-like protein-activating enzyme Gsa7p/Apg7p	IPR006285	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q94CD5

Fln msg: Distance to subject end: 633 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 75 - 697

Fln protein: NVGSFINISAVGGSSSSGHSILQFSPLQSTVDEGFWRKLADLKLEVLGISENPLDITGFYAPMFHEQVSNHLKLL

Protein Length: 76

Fln nts: A_-_ATGTAGGATCATTTATTAATATTTCAGCAGTGGGAGGATCTTCTTCCAGCGGCCATTCTATCTTGCAGTTTTCGCCGCTGCAGAGTACCGTGGACGAGGGTTTCTGGAGAAAATTAGCTGACCTAAAGCTCGAGGTCCTCGGCATCTCTGAAAATCCGCTCGACATCACAGGGTTCTATGCTCCAATGTTTCATGAACAGGTGTCAAATCATCTGAAATTGCTT

Fln Alignment:

biogeco3_mira_c12530___ILQFSPLQSTVDEGFWRKLADLKLEVLGISENPLDITGFYAPMFHEQVSNHLKLL
Q94CD5__________________ILQFAPLNSSVDEGFWHSFSSLKLDKLGIDDSPISITGFYGPCGHPQVSNHLTLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain