SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16377

Length: 232 nt

UniGene Fasta

>biog3_v1.0_unigene16377
AATGTCATTTATATCAGTGAAGCTGGATATGAAGAGAATTGAGTCCTTACAGCTTGACATTTCTGCTTATACTGTGGCCGAAGCTATTTTGGTCACTCCAAAAATGAAACTGAAGCAGCAGCACCTTAGGGTTCTGGATCATGAGAAACTGGTGATTTTTCCACCTGAAGCAGATAGAATGAAGCTTTACTTTGCTATGCATTTCTTGAGAAACATGCTTCCAAAGGTTATT

Ace file of the UniGene biog3_v1.0_unigene16377

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5596	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA	-	-	71%
FL-Next	sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss).	-	-	60%
Blast2go	dna-directed rna polymerase iii subunit rpc1-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Pyrimidine metabolism	00240	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	75%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	75%
Blast2go	DNA binding	GO:0003677	Molecular Function	75%
Blast2go	ribonucleoside binding	GO:0032549	Molecular Function	75%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	Glutamate/phenylalanine/leucine/valine dehydrogenase	IPR006095	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA-directed RNA polymerase III largest subunit	IPR015700	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RSV5

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 77 - 1397

Fln protein: MSFISVKLDMKRIESLQLDISAYTVAEAILVTPKMKLKQQHLRVLDHEKLVIFPPEADRMKLYFAMHFLRNMLPKVI

Protein Length: 78

Fln nts: AATGTCATTTATATCAGTGAAGCTGGATATGAAGAGAATTGAGTCCTTACAGCTTGACATTTCTGCTTATACTGTGGCCGAAGCTATTTTGGTCACTCCAAAAATGAAACTGAAGCAGCAGCACCTTAGGGTTCTGGATCATGAGAAACTGGTGATTTTTCCACCTGAAGCAGATAGAATGAAGCTTTACTTTGCTATGCATTTCTTGAGAAACATGCTTCCAAAGGTTATT

Fln Alignment:

biogeco3_mira_c12491___SFISVKLDMKRIESLQLDISAYTVAEAILVTPKMKLKQQHLRVLDHEKLVIFPPEADRMKLYFAMHFLRNMLPKVI
A9RSV5__________________AIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIVDRDKLIVIPPDQDKGKLYFYLHSLCNMLPKVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain