SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16356

Length: 321 nt

UniGene Fasta

>biog3_v1.0_unigene16356
AATGTAAAATTGATCCTAATATTCTAAATTCCGAACTGTCCAAGAAAAGATGGTGATGCTGAGAATCCTGAGAACTTGGAGTCTAATCAGCAAAATAGTACAGAGCACATGTTGAATGTGCCTGATGGGTACATAACTACTGAAGAGCAGAAACAAGCTATTGACATCGTCTGTGATTTCATTCAGATGAATCTGCCCTCAACAACACTACAAGCCCTTCTCCAGCTGTGTGGAAGGCTTACAAGGGTGCATGCCATAGCACTGCGTTTCCTTGATAGAGGTGGATTGGTTGCTTTGCTGAACTTGCCTACTAGTTGCCTA

Ace file of the UniGene biog3_v1.0_unigene16356

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1787	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-protein ligase 1 [Arabidopsis thaliana]	-	-	41%
FL-Next	sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress).	-	-	42%
Blast2go	e3 ubiquitin-protein ligase upl1-like	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	65%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	65%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	65%
Blast2go	membrane	GO:0016020	Cellular Component	65%
Blast2go	cytosol	GO:0005829	Cellular Component	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	65%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H0T4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 2049 aas, your sequence is shorter than subject: 107 - 3658

Fln protein: NVKLILIF*IPNCPRKDGDAENPENLESNQQNSTEHMLNVPDGYITTEEQKQAIDIVCDFIQMNLPSTTLQALLQLCGRLTRVHAIALRFLDRGGLVALLNLPTSCL

Protein Length: 108

Fln nts: AATGTAAAATTGATCCTAATATTCTAAATTCCGAACTGTCCAAGAAAAGATGGTGATGCTGAGAATCCTGAGAACTTGGAGTCTAATCAGCAAAATAGTACAGAGCACATGTTGAATGTGCCTGATGGGTACATAACTACTGAAGAGCAGAAACAAGCTATTGACATCGTCTGTGATTTCATTCAGATGAATCTGCCCTCAACAACACTACAAGCCCTTCTCCAGCTGTGTGGAAGGCTTACAAGGGTGCATGCCATAGCACTGCGTTTCCTTGATAGAGGTGGATTGGTTGCTTTGCTGAACTTGCCTACTAGTTGCCTA

Fln Alignment:

biogeco3_mira_c12453___KDGDAENPENLESNQQNSTEHMLNVPDGYITTEEQKQAIDIVCDFIQMNLPSTTLQALLQLCGRLTRVHAIALRFLDRGGLVALLNLPTSC
Q8H0T4__________________KDALSSDVAKGESNQ--ALESMFGKSTGYLTMEESSKVLLIACGLIKQRVPAMIMQAVLQLCARLTKSHALAIQFLENGGLSSLFNLPKKC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain