SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16345

Length: 372 nt

UniGene Fasta

>biog3_v1.0_unigene16345
AATGTTAAAGAATCCTTCTTTAGAGATGCTTGTAGGGGGTGTGCAGAGTGTTACCCTTGGTGATGATGAGGCAAAGAGAAGGGGAGTTCAGAAGACTATACTTGAGAGAAAAGGACCATCCTCATTTACTTATGCTGTAGAGATGACATCAAGGACCGAATGCCGTATTCATCACAGCTTAGAGGCAACTGTTGATGCCATATTAGCAGGAAAATCTCCATCATTTGAGGTCCGCCAGATGGTTATGAAGGTAGTGACAGATGGAAGTCCTGCCACAACAGAACCAGACATTGGAAGCCATTCTAGGAGGACTTTGACATGTTTAGAGTCTGATGGTGTTTTTGAGGCTAACAATGAGAGTGATGATGATGA

Ace file of the UniGene biog3_v1.0_unigene16345

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58257	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATPase-like protein n=3 Tax=Oryza sativa RepID=Q7XI12_ORYSJ	-	-	6.0e-28	68%
FL-Next	sp=Uncharacterized protein ycf45; Porphyra purpurea. Plastid; Chloroplast.	-	-	0.0	51%
Blast2go	uncharacterized protein ycf45-like	-	-	5.85098e-33	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	5.85098e-33	84%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P51281

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 123 - 565

Fln protein: MLKNPSLEMLVGGVQSVTLGDDEAKRRGVQKTILERKGPSSFTYAVEMTSRTECRIHHSLEATVDAILAGKSPSFEVRQMVMKVVTDGSPATTEPDIGSHSRRTLTCLESDGVFEANNESDDD

Protein Length: 124

Fln nts: AATGTTAAAGAATCCTTCTTTAGAGATGCTTGTAGGGGGTGTGCAGAGTGTTACCCTTGGTGATGATGAGGCAAAGAGAAGGGGAGTTCAGAAGACTATACTTGAGAGAAAAGGACCATCCTCATTTACTTATGCTGTAGAGATGACATCAAGGACCGAATGCCGTATTCATCACAGCTTAGAGGCAACTGTTGATGCCATATTAGCAGGAAAATCTCCATCATTTGAGGTCCGCCAGATGGTTATGAAGGTAGTGACAGATGGAAGTCCTGCCACAACAGAACCAGACATTGGAAGCCATTCTAGGAGGACTTTGACATGTTTAGAGTCTGATGGTGTTTTTGAGGCTAACAATGAGAGTGATGATGATGA

Fln Alignment:

biogeco3_mira_c12442___MLKNPSLEMLVGGVQSVTLGDDEAKRRGVQKTILERKGPSSFTYAVEMTSRTECRIHHSLEATVDAILAGKSPSFEVRQM
P51281__________________LIKNPTLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAWIVHEKVEETIDQILQGHQPFVQKRQI

SSRs (tot: 1)

Start position	End position	Sequence	Length
361	372	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain