SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16331

Length: 316 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16331
ATGCTGAACTTGGATTGTGATCATTATATAAACAATAGCAAGGCAATTCGTGAATCCATGTGTTTCATGATGGATCCTACTGTTGGAAGAAAGTCTGTTATGTGCAGTTTCCCCAGAGATTTGATGGTATTGATAGGCACGATCGTTATGCCAATCGCAACGTGGTTTTCTTCGATATCAATATGAAAGGTTTGGATGGCATTCAAGGACCCATATATGTTGGTACTGGATGTGTTTTCAGAAGGCAAGCACTTTATGGATTTGATGCTCCTAAAGCTGAGAAGGAACCAACAAGGACTTGTAATTGCTGGACATT

Ace file of the UniGene biog3_v1.0_unigene16331 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2441	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cellulose synthase 6 [Eucalyptus grandis]	-	-	78%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine).	-	-	64%
Blast2go	cellulose synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	86%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	86%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q5DI94

Fln msg: Overlapping hits, possible frame ERROR between 117 and 87, Distance to subject end: 424 aas, your sequence is shorter than subject: 105 - 1057

Fln protein: MLNLDCDHYINNSKAIRESMCFMMDPTVxxxxxxxxxxxxFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPKAEKEPTRTCNCWT

Protein Length: 106

Fln nts: ATGCTGAACTTGGATTGTGATCATTATATAAACAATAGCAAGGCAATTCGTGAATCCATGTGTTTCATGATGGATCCTACTGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGATGGTATTGATAGGCACGATCGTTATGCCAATCGCAACGTGGTTTTCTTCGATATCAATATGAAAGGTTTGGATGGCATTCAAGGACCCATATATGTTGGTACTGGATGTGTTTTCAGAAGGCAAGCACTTTATGGATTTGATGCTCCTAAAGCTGAGAAGGAACCAACAAGGACTTGTAATTGCTGGACATT

Fln Alignment:

biogeco3_mira_c12423___MLNLDCDHYINNSKAIRESMCFMMDPTVGxxxxxxxxxxRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPKAEKEPTRTCNCW
Q5DI94__________________ILNLDCDHYLNNSKAVREAMCFLMDPQLGxxxxxxxxxxRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSQKKPKMTCDCW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain