SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16300

Length: 375 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16300
GTTTAAGTTGGATAATGAATTAAAGAAGGCAGCTGCTGATGAAGAGGTGAAAATGCATTGGCTAGCAAAATCAGTCGTGAACGAATTGGTCATGAGATTGATCTGATGCTTTCTGGCAATCATCCTGTCAAGGCAATTAGCCAGCTTAATGATTTGCAGCTATTCTGGACTGTATTCAGCCTTCCTCAAAATGTGGACAATCAATTACATGAGGATTGTGAAAGACTTTGTGTGAAATGCATGGACGCTATTTGGGAAGTTCTTGGTGAAGTTGGATTTGAAATACTCAATAAGGATCATAGAAGATTGTGTTCATATAGTGCATTATTCTTGCCCTTAAGGAAAGCAAGTTATGCAGATCGCAAAGGAAACATT

Ace file of the UniGene biog3_v1.0_unigene16300 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28772	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Poly(A) polymerase, putative n=1 Tax=Ricinus communis RepID=B9T6L0_RICCO	-	-	62%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	52%
Blast2go	polynucleotide adenylyltransferase-like protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Poly A polymerase, head domain	IPR002646	-	0.0	-
Sma3	C-type lectin, conserved site	IPR018378	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MW94

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 192 aas, your sequence is shorter than subject: 125 - 528

Fln protein: V*VG**IKEGSC**RGENALASKISRERIGHEIDLMLSGNHPVKAISQLNDLQLFWTVFSLPQNVDNQLHEDCERLCVKCMDAIWEVLGEVGFEILNKDHRRLCSYSALFLPLRKASYADRKGNI

Protein Length: 126

Fln nts: GTTTAAGTTGGATAATGAATTAAAGAAGGCAGCTGCTGATGAAGAGGTGAAAATGCATTGGCTAGCAAAATCAGTCGTGAACGAATTGGTCATGAGATTGATCTGATGCTTTCTGGCAATCATCCTGTCAAGGCAATTAGCCAGCTTAATGATTTGCAGCTATTCTGGACTGTATTCAGCCTTCCTCAAAATGTGGACAATCAATTACATGAGGATTGTGAAAGACTTTGTGTGAAATGCATGGACGCTATTTGGGAAGTTCTTGGTGAAGTTGGATTTGAAATACTCAATAAGGATCATAGAAGATTGTGTTCATATAGTGCATTATTCTTGCCCTTAAGGAAAGCAAGTTATGCAGATCGCAAAGGAAACATT

Fln Alignment:

biogeco3_mira_c12377___ENALASKISRERIGHEIDLMLSGNHPVKAISQLNDLQLFWTVFSLPQNVDNQLHEDCERLCVKCMDAIWEVLGEVGFEILNKDHRRLCSYSALFLPLRKASYADRKG
B9MW94__________________KNALKAKISKERIGTEIDLMISGNQPVKAMTYIADLTLFWVVFNLHPKVEPTVSEECQGLCVAYLDAAWNLIHLIGGSSFTGEQRRLCLYAALFLPLRNTIYKDEKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain