SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16295

Length: 318 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16295
AATGTATTTGTCAAGGATCTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGAAAATGACCAAAATGAAAATATGGATTCCGAATCAGACAGTGGTTCATTCAAGGATGCCCCTGATACATCCCTTCGTCTCTCATTAGATGCAGATAGGCCTTCTCGCTCTAGTTCACTTAATAGCCCCTTTGATCTTGATAAACTTCGTGAAAATGAAGAGAACGTCGGAGGTATTTCTGAACACATTAGGATGATCATAGGAAAGACTAAGGATAATCAATCTAAATTGCGGGAGACAAATGACGTGAATTCACAGACATT

Ace file of the UniGene biog3_v1.0_unigene16295 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4127	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SCX9_PHYPA	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	sucrose-phosphate synthase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose-phosphate synthase.	EC:2.4.1.14	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	72%
Blast2go	Metabolic pathways	01100		0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	72%
Blast2go	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM0

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 105 - 713

Fln protein: MYLSRISQCRMRHPQWQSENDQNENMDSESDSGSFKDAPDTSLRLSLDADRPSRSSSLNSPFDLDKLRENEENVGGISEHIRMIIGKTKDNQSKLRETNDVNSQT

Protein Length: 106

Fln nts: AATGTATTTGTCAAGGATCTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGAAAATGACCAAAATGAAAATATGGATTCCGAATCAGACAGTGGTTCATTCAAGGATGCCCCTGATACATCCCTTCGTCTCTCATTAGATGCAGATAGGCCTTCTCGCTCTAGTTCACTTAATAGCCCCTTTGATCTTGATAAACTTCGTGAAAATGAAGAGAACGTCGGAGGTATTTCTGAACACATTAGGATGATCATAGGAAAGACTAAGGATAATCAATCTAAATTGCGGGAGACAAATGACGTGAATTCACAGACATT

Fln Alignment:

biogeco3_mira_c12365___YLSRISQCRMRHPQWQSENDQNENMDSESDSGSFKDAPDTSLRLSLDADRPSRSSSLNSPFDLDKL
B8LLM0__________________YLSRVALCRMRHPQWQTDTLMDTTMEEESMGDSLKDVQDMSLRLSVDGDKYSVYGSLDNSAEVDKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain