SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16253

Length: 227 nt

UniGene Fasta

>biog3_v1.0_unigene16253
AATGTCTTCAACTCTTTGAAGAAATGCTAAAGGCAGGCATAAAGCCAAACCCTGTCACGTTCATTTCTGTTCTCTCTGCATGCAGTCATGCAGGGTTAGTGGATGAGGGTAGATACTATTTTGAATCCATGAATCGAGATCATTCCATTACACCAAGTAAGGACCACTATTCCTGTATGATTGACATTCTTGGTCGTGCTGGATATCTTGAAGAGGCTGAGAAATTT

Ace file of the UniGene biog3_v1.0_unigene16253

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59094	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	1.0e-21	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.35919e-28	79%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3		IPR008512	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 213 aas, your sequence is shorter than subject: 75 - 370

Fln protein: CLQLFEEMLKAGIKPNPVTFISVLSACSHAGLVDEGRYYFESMNRDHSITPSKDHYSCMIDILGRAGYLEEAEKF

Protein Length: 76

Fln nts: AATGTCTTCAACTCTTTGAAGAAATGCTAAAGGCAGGCATAAAGCCAAACCCTGTCACGTTCATTTCTGTTCTCTCTGCATGCAGTCATGCAGGGTTAGTGGATGAGGGTAGATACTATTTTGAATCCATGAATCGAGATCATTCCATTACACCAAGTAAGGACCACTATTCCTGTATGATTGACATTCTTGGTCGTGCTGGATATCTTGAAGAGGCTGAGAAATTT

Fln Alignment:

biogeco3_mira_c12302___LFEEMLKAGIKPNPVTFISVLSACSHAGLVDEGRYYFESMNRDHSITPSKDHYSCMIDILGRAGYLEEAEKF
A9P0W0__________________LFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain