SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16226

Length: 298 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16226
TATACTTCTAAGGAATGGATTGCATATTGTAAAGAAGCTGGAATTAAGAGGGAGCTCATTGTTCCCTATTATGTTGAACAAAATGGAGTGGCCGAAAGAAAGAATAGGTCAATTGGAGAAGGTATTCGAACAATGCTCCCTGATTAAGACCTACCAAAATTCTTATGGGGAGAAGAAGCAATGACAAATGTGTACATTCAAAATAGAAGTCCTCATAGAAAACTTAATAATATTACACCTGAAGAAGTATTCACAAGAAAGAAGCCAAGTGTGGATCACCTCCGAATCCTTAGACATT

Ace file of the UniGene biog3_v1.0_unigene16226 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59315	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F6N18.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LPK1_ARATH	-	-	9.0e-21	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	retrotransposon unclassified	-	-	2.71038e-24	66%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 99 - 407

Fln protein: YTSKEWIAYCKEAGIKRELIVPYYVEQNGVAERKNRSIGEGIRTMLPD*DLPKFLWGEEAMTNVYIQNRSPHRKLNNITPEEVFTRKKPSVDHLRILRH

Protein Length: 100

Fln nts: TATACTTCTAAGGAATGGATTGCATATTGTAAAGAAGCTGGAATTAAGAGGGAGCTCATTGTTCCCTATTATGTTGAACAAAATGGAGTGGCCGAAAGAAAGAATAGGTCAATTGGAGAAGGTATTCGAACAATGCTCCCTGATTAAGACCTACCAAAATTCTTATGGGGAGAAGAAGCAATGACAAATGTGTACATTCAAAATAGAAGTCCTCATAGAAAACTTAATAATATTACACCTGAAGAAGTATTCACAAGAAAGAAGCCAAGTGTGGATCACCTCCGAATCCTTAGACATT

Fln Alignment:

biogeco3_mira_c12261___YTSKEWIAYCKEAGIKRELIVPYYVEQNGVAERKNRSIGEGIRTMLPD*DLPKFLWGEEAMTNVYIQNRSPHRKLNNITPEEVFTRKKPSVDHLRI
B8LKX7__________________YVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain