SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16214

Length: 247 nt

UniGene Fasta

>biog3_v1.0_unigene16214
AATGTGGAAAGATGGTGTTGCCCTTGTCTTCATTGTCATCCCATATTTCCCTTACTATGACACACAATCGATCTCATCATCTCGCTCTGAACGCCTATGTGAACACACAATGCATTCCACGTCTCTTCACCGCGCTTAATAACAGAAGTTCTGCCAGAAAACATAGAAGCATCTACCTACGATCGGGCTCAAGCAAGATCATTGCTTGTGTTGGCGAGACTCAACTTCCCTTTCCAATCACTCTGAT

Ace file of the UniGene biog3_v1.0_unigene16214

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39145	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abietadiene synthase, chloroplastic n=1 Tax=Abies grandis RepID=TPSDV_ABIGR	-	-	6.0e-09	51%
FL-Next	sp=Levopimaradiene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	61%
Blast2go	levopimaradiene abietadiene synthase	-	-	3.10157e-16	61%

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q675L4

Fln msg: Distance to subject end: 783 aas, your sequence is shorter than subject: 78 - 859

Fln protein: MVLPLSSLSSHISLTMTHNRSHHLALNAYVNTQCIPRLFTALNNRSSARKHRSIYLRSGSSKIIACVGETQLPFPITL

Protein Length: 79

Fln nts: AATGTGGAAAG_-_ATGGTGTTGCCCTTGTCTTCATTGTCATCCCATATTTCCCTTACTATGACACACAATCGATCTCATCATCTCGCTCTGAACGCCTATGTGAACACACAATGCATTCCACGTCTCTTCACCGCGCTTAATAACAGAAGTTCTGCCAGAAAACATAGAAGCATCTACCTACGATCGGGCTCAAGCAAGATCATTGCTTGTGTTGGCGAGACTCAACTTCCCTTTCCAATCACTCTGAT

Fln Alignment:

biogeco3_mira_c12245___SHHLALNAYVNTQCIPRLFTALNNRSSARKHRSIYLR--SGSSKIIACVGETQLPFP
Q675L4__________________AHHLTLNAYANTQCIPHFFSTLNAGTSAGKRSSLYLRWGKGSNKIIACVGEDSLSAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain