SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16195

Length: 362 nt

UniGene Fasta

>biog3_v1.0_unigene16195
CCAGCAGGAGAGCTGCTGTATCCTTCTTATCCTGAGAGCAATGGTACATGGAAATTTCCTGGAATTGGAGCTTTTCAATGCTATGACAAGTATATGCTGGCTAACCTTAAAGCCACAGCTGAAACTACTGGTAACAAAGAATGGGGTTATGGAGGGCCAACCGGTGCAGGTGACTACAACAGTTGGCCAGAGGAGACAGAGTTCTTCTGCTGTGAAGGTGGTTGGAACTCACCTTATGGTGAGTTTTTTTGCAGTGGTATTCTAACATGCTTCTGAATCATGGGGAAAGGATCCTAACAGAAGCTGAATCCATTTTCACAACTCCGGTACCAAAGTCTCTGGCAAAGTGGCAGGTATACATT

Ace file of the UniGene biog3_v1.0_unigene16195

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21284	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase n=1 Tax=Picea sitchensis RepID=A9NVE4_PICSI	-	-	88%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	74%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	74%
Blast2go	Metabolic pathways	01100		0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	74%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	74%
Blast2go	gametophyte development	GO:0048229	Biological Process	74%
Blast2go	starch catabolic process	GO:0005983	Biological Process	74%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	74%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	74%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	74%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	74%
Blast2go	protein self-association	GO:0043621	Molecular Function	74%
Blast2go	cytosol	GO:0005829	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: Overlapping hits, possible frame ERROR between 249 and 246, and overlapping frame ERROR between 317 and 314, Distance to subject end: 169 aas, your sequence is shorter than subject: 121 - 492

Fln protein: PAGELLYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETTGNKEWGYGGPTGAGDYNSWPEETEFFCCEGGWNSPYGExxxQWYSNMLLNHGERILTEAExxxxNSGTKVSGKVAGIH

Protein Length: 122

Fln nts: CCAGCAGGAGAGCTGCTGTATCCTTCTTATCCTGAGAGCAATGGTACATGGAAATTTCCTGGAATTGGAGCTTTTCAATGCTATGACAAGTATATGCTGGCTAACCTTAAAGCCACAGCTGAAACTACTGGTAACAAAGAATGGGGTTATGGAGGGCCAACCGGTGCAGGTGACTACAACAGTTGGCCAGAGGAGACAGAGTTCTTCTGCTGTGAAGGTGGTTGGAACTCACCTTATGGTGAGxxxxxxxxxCAGTGGTATTCTAACATGCTTCTGAATCATGGGGAAAGGATCCTAACAGAAGCTGAATCxxxxxxxxxCAACTCCGGTACCAAAGTCTCTGGCAAAGTGGCAGGTATACATT

Fln Alignment:

biogeco3_mira_c12217___PAGELLYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETTGNKEWGYGGPTGAGDYNSWPEETEFFCCEGGWNSPYGEFxLQWYSNMLLNHGERILTEAESIxHNSGTKVSGKVAGIH
A9NVE4__________________PAGELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFCSEGGWNSPYGEFxLQWYSNMLLNHGERILAEAESIxHKSGARLSGKVAGIH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain