SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16186

Length: 381 nt

UniGene Fasta

>biog3_v1.0_unigene16186
AGAGGCATGTGAAGCTGGTGTCGGTGCAATTGTTGAACCTGGTGGCAGTCATAAGAGATCAAGATGCTATAGATTGTTGCAACAAGTATGGAGTGCCTCTCTTATTCACAACAATTAGACACTTTAGGCACTAATCTTGTGATATGTTCTTGTAATCCCATTTATTGTTGTTTGGATGGCTTTGGAAGAACAAGATATGCCATGAGCAGTTCTAGAGAGAGTTGATATTGGTGGGCATTCGATATAAATATTATGCTGAGGAACACACATTTTATAGTTTGTTAGTGCAGGTGGAAAGCTTACTGGAACGGAATTTTCGTTCTGACTATTTTGACTCTGATGTTTCCAAAATATGTATAAAATGTTGCATCTGCATGACTT

Ace file of the UniGene biog3_v1.0_unigene16186

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2204	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Bifunctional purine biosynthesis protein, putative n=1 Tax=Ricinus communis RepID=B9SXJ1_RICCO	-	-	76%
FL-Next	tr=Aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase; Vigna unguiculata (Cowpea).	-	-	75%
Blast2go	bifunctional purine biosynthesis	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylaminoimidazolecarboxamide formyltransferase.	EC:2.1.2.3	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Purine metabolism	00230		86%
Blast2go	One carbon pool by folate	00670		86%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065		86%
Blast2go	Biosynthesis of plant hormones	01070		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	Biosynthesis of secondary metabolites	01110		86%
Blast2go		EC:3.5.4.1-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	IMP biosynthetic process	GO:0006188	Biological Process	86%
Blast2go	response to cold	GO:0009409	Biological Process	86%
Blast2go	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	GO:0004643	Molecular Function	86%
Blast2go	IMP cyclohydrolase activity	GO:0003937	Molecular Function	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	stromule	GO:0010319	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	AICARFT/IMPCHase bienzyme	IPR002695	-	-
Sma3		IPR013982	-	-
Sma3	Methylglyoxal synthase-like domain	IPR011607	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q84XA4

Fln msg: Separated hits, possible frame ERROR between 49 and 51, your sequence is shorter than subject: 45 - 612

Fln protein: EACEAGVGAIVEPGGxxIRDQDAIDCCNKYGVPLLFTTIRHFRH*

Protein Length: 46

Fln nts: AGAGGCATGTGAAGCTGGTGTCGGTGCAATTGTTGAACCTGGTGGCAGxxxCATAAGAGATCAAGATGCTATAGATTGTTGCAACAAGTATGGAGTGCCTCTCTTATTCACAACAATTAGACACTTTAGGCACTAATCTTGTGATATGTTCTTGTAATCCCATTTATTGTTGTTTGGATGGCTTTGGAAGAACAAGATATGCCATGAGCAGTTCTAGAGAGAGTTGATATTGGTGGGCATTCGATATAAATATTATGCTGAGGAACACACATTTTATAGTTTGTTAGTGCAGGTGGAAAGCTTACTGGAACGGAATTTTCGTTCTGACTATTTTGACTCTGATGTTTCCAAAATATGTATAAAATGTTGCATCTGCATGACTT

Fln Alignment:

biogeco3_mira_c12204___EACEAGVGAIVEPGGSxIRDQDAIDCCNKYGVPLLFTTIRHFRH
Q84XA4__________________EACESGIGVIAEPGGSxIRDQDAIDCCNKYGVSLLFTNVRHFRH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain