SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16143

Length: 272 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene16143
AATGTAATTAGATTTGGATTTATCTGCTGCTTTGCTTGGCCATCGCTCACAAAGGTGGTCTGCACTTGTGGAGGATGGGAAGATTAAAGCATTGAATGTGGAGAAGGTCCCCTCTGAGTTCAAGGTGTCTGGTGCGGAGACTATTCTTGGACAGATTTGAGTTTTAAATATTTAAGCTGCTAATACAACTTGATTGAAATTTGAGGCATATATGTTAGCTAATTGTATTTCATGGTGGTGGGAAGTCAGACACTGTAGTTATAAAAGACATT

Ace file of the UniGene biog3_v1.0_unigene16143 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15950	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxiredoxin, putative n=1 Tax=Ricinus communis RepID=B9RTW9_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	at3g06050 f24f17_3	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	84%
Blast2go	Methane metabolism	00680	84%
Blast2go	Phenylpropanoid biosynthesis	00940	84%
Blast2go	Biosynthesis of phenylpropanoids	01061	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	84%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	84%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	84%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Redoxin	IPR013740	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0A0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 53 - 193

Fln protein: M*LDLDLSAALLGHRSQRWSALVEDGKIKALNVEKVPSEFKVSGAETILGQI*

Protein Length: 54

Fln nts: AATGTAATTAGATTTGGATTTATCTGCTGCTTTGCTTGGCCATCGCTCACAAAGGTGGTCTGCACTTGTGGAGGATGGGAAGATTAAAGCATTGAATGTGGAGAAGGTCCCCTCTGAGTTCAAGGTGTCTGGTGCGGAGACTATTCTTGGACAGATTTGA___GTTTTAAATATTTAAGCTGCTAATACAACTTGATTGAAATTTGAGGCATATATGTTAGCTAATTGTATTTCATGGTGGTGGGAAGTCAGACACTGTAGTTATAAAAGACATT

Fln Alignment:

biogeco3_mira_c12138___GHRSQRWSALVEDGKIKALNVEKVPSEFKVSGAETILGQI
A9P0A0__________________GHRSQRWSALVDDGKIKTLNVEKVPSEFKVSGAETILGQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain