SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16135

Length: 292 nt

UniGene Fasta

>biog3_v1.0_unigene16135
AAGTCAGTGGTAGTCAACGCATAGTACGCGGGCATGTCGCAACAGGTTTCTCAGTTACCTCTGCATTTCTGCGAGAACTTACACTTAAGGCTATGCTGATTCTTATTCCAAAGTTATCCCAACGCACTATTACAGGATCATTGTTAAAGTACCTATCTAAGCTACAGGTGGATGCATTGCCAGCAATAAGAACAAACACAACAATATTGCAACTCGCATCTTACCTAATGTTGTCGTGCTGACTATTGATCCAGACAGTGATGTGAGATCTAAAGCTTTCGAGGCGATTGAT

Ace file of the UniGene biog3_v1.0_unigene16135

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26474	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	WS02841.CR_A04 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02841_A04 3', mRNA sequence.	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	low quality protein: probable inactive serine threonine-protein kinase scy1-like	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRZ8

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 274 aas, your sequence is shorter than subject: 97 - 527

Fln protein: VSGSQRIVRGHVATGFSVTSAFLRELTLKAMLILIPKLSQRTITGSLLKYLSKLQVDALPAIRTNTTxxxxxxxxxVVVLTIDPDSDVRSKAFEAID

Protein Length: 98

Fln nts: AAGTCAGTGGTAGTCAACGCATAGTACGCGGGCATGTCGCAACAGGTTTCTCAGTTACCTCTGCATTTCTGCGAGAACTTACACTTAAGGCTATGCTGATTCTTATTCCAAAGTTATCCCAACGCACTATTACAGGATCATTGTTAAAGTACCTATCTAAGCTACAGGTGGATGCATTGCCAGCAATAAGAACAAACACAACAxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTGTCGTGCTGACTATTGATCCAGACAGTGATGTGAGATCTAAAGCTTTCGAGGCGATTGAT

Fln Alignment:

biogeco3_mira_c12128___HVATGFSVTSAFLRELTLKAMLILIPKLSQRTITGSLLKYLSKLQVDALPAIRTNTTIL--QLASYLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIATRILPNVVVLTIDPDSDVRSKAFEAID
B8LRZ8__________________HVATGFSDTSAFLRELTLKAMLILIPKLSQRTITGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIATRILPNVVVLTVDPDSDVRSKAFEAID

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain