SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16068

Length: 441 nt

UniGene Fasta

>biog3_v1.0_unigene16068
AATCTGCATCATCACTAGAGAATCAGGAAGCATTGAAACGCATTTTATTCATTTTTGCTAAGTTGCACCCATTCAACTCAATATGTGCAAGGGATGAACGATGTCCTGGCTCCACTGTACTATGTGTTCAAAACAGACCCAGATGAAGGAAATGAAGTCAATGCAGAAGCAGATGCCTTTTTTGTTTAGTGGAGTTGCTGAGTAATTTTCTGGATCATTTTTGTCAGAAATTGGACAACAGCACTGTAGGCATTCGTTCTACAATGGCACGAATGACAGATCTTTTGAAAAAACACGATGAAGAGTTGTGGCGCCACCTGGATGCTACAACCAAGGTACTTGGTTAAAGAACCAAAAGGTAAACCCTCAGTTTTATGCTTTCAGGTGGATAACTACACTCTTCACACAAGAGTTTAGTTTCCTTGATTGTTTAAGGACATT

Ace file of the UniGene biog3_v1.0_unigene16068

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35	2/3
SustainPine v2.0	sp_v2.0_unigene63135	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	RabGAP/TBC domain-containing protein [Arabidopsis thaliana] emb\|CAB36837.1\| putative protein [Arabidopsis thaliana] emb\|CAB78415.1\| putative protein [Arabidopsis thaliana] gb\|AEE83318.1\| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	tbc domain-containing protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of Rab GTPase activity	GO:0032851	Biological Process	85%
Blast2go	Rab GTPase activator activity	GO:0005097	Molecular Function	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8J2

Fln msg: Separated hits, possible frame ERROR between 338 and 356, Distance to subject end: 63 aas, atg_distance in limit (1-15): atg_distance = 8, W2: There is no M at the beginning, your sequence is shorter than subject: 146 - 209

Fln protein: SASSLENQEALKRILFIFAKLHPFNSICARDERCPGSTVLCVQNRPR*RK*SQCRSRCLFCLVELLSNFLDHFCQKLDNSTVGIRSTMARMTDLLKKHDEELWRHLDATTKxxxxxxxKVNPQFYAFRWITTLFTQEFSFLDCLRT

Protein Length: 147

Fln nts: AATCTGCATCATCACTAGAGAATCAGGAAGCATTGAAACGCATTTTATTCATTTTTGCTAAGTTGCACCCATTCAACTCAATATGTGCAAGGGATGAACGATGTCCTGGCTCCACTGTACTATGTGTTCAAAACAGACCCAGATGAAGGAAATGAAGTCAATGCAGAAGCAGATGCCTTTTTTGTTTAGTGGAGTTGCTGAGTAATTTTCTGGATCATTTTTGTCAGAAATTGGACAACAGCACTGTAGGCATTCGTTCTACAATGGCACGAATGACAGATCTTTTGAAAAAACACGATGAAGAGTTGTGGCGCCACCTGGATGCTACAACCAAGGTxxxxxxxxxxxxxxxxxxAAAGGTAAACCCTCAGTTTTATGCTTTCAGGTGGATAACTACACTCTTCACACAAGAGTTTAGTTTCCTTGATTGTTTAAGGACATT

Fln Alignment:

biogeco3_mira_c12024___SASSLENQEALKRILFIFAKLHPFNSICARDERCPGSTVLCVQNXXXXXXXXXXXXXXLFCLVELLSNFLDHFCQKLDNSTVGIRSTMARMTDLLKKHDEELWRHLDATTKVxxxxxxKVNPQFYAFRWITTLFTQEFSFLDCLR
D5A8J2__________________SAFAIKNQEALKRILLIFAKLNPGIRYVQGMNEVVSPLFYVFKTDPDESNAANAEADTFFCFVQLLSDFRDHFCQQLDNSVVGIRSTMAKLTALLKKHDEELWRHLDVTTKVxxxxxxKVNPQFYAFRWITLLLTQEFDFPDSLR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
196	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain