SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene16030

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene16030
TTGCTGCTCCAGAAAGTATGGCTGCTAGGATTGAACTTCCAGATTCTTTCTATGACCTTTCAGCTGCAGAAGCGAGAAGAGAAGCTGAATCAAGGAAGAAAAAGATTGAAGATTCCCAACTTTTGATTCCAAAATCTCTCAAAGAAAAGCAGGCAAAATCTGCACGGAAGAGATATAAAGCCACTGTAATTCGAATACAGTTTCCGGATGGGGTAATCCTACAAGGTGTTTTCCTTCCA

Ace file of the UniGene biog3_v1.0_unigene16030

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11358	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CDC48-interacting UBX-domain protein n=3 Tax=Arabidopsis RepID=Q9ZU93_ARATH	-	-	45%
FL-Next	tr=Nucleic acid binding protein, putative; Ricinus communis (Castor bean).	-	-	74%
Blast2go	ubx domain-containing protein 6-like	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	67%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	UBX	IPR001012	-	-
Sma3	PUG domain	IPR006567	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SJ14

Fln msg: Distance to subject end: 86 aas, your sequence is shorter than subject: 79 - 470

Fln protein: AAPESMAARIELPDSFYDLSAAEARREAESRKKKIEDSQLLIPKSLKEKQAKSARKRYKATVIRIQFPDGVILQGVFLP

Protein Length: 80

Fln nts: TTGCTGCTCCAGAAAGTATGGCTGCTAGGATTGAACTTCCAGATTCTTTCTATGACCTTTCAGCTGCAGAAGCGAGAAGAGAAGCTGAATCAAGGAAGAAAAAGATTGAAGATTCCCAACTTTTGATTCCAAAATCTCTCAAAGAAAAGCAGGCAAAATCTGCACGGAAGAGATATAAAGCCACTGTAATTCGAATACAGTTTCCGGATGGGGTAATCCTACAAGGTGTTTTCCTTCCA

Fln Alignment:

biogeco3_mira_c11968___AAPESMAARIELPDSFYDLXXXXXXXXXXXXXXXIEDSQLLIPKSLKEKQAKSARKRYKATVIRIQFPDGVILQGVFLP
B9SJ14__________________SVPESVAAKIELPDSFYNLSQEELKREADARKKKIADSQLLIPKSYKEKQAQAARRRYKRTLIRIQFPDGVVLQGVFAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain