SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15997

Length: 293 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15997
GGGATGAGATTTGTGCCCTGTTTAGAGTGCAGTGGAAGCTGTAAGCTTGTCCAGGATCAAAATGTTGTTGTGAGGTGTCCACACTGCAATGAGAATGGATTGATACAATGCCCCATATGCTCTGCTGATGCAACATATTGATAATCCTTAAAATCCTAGATTGGCAAACTCATCGGCTGATTGTGTTCGGATCATATCGGATGCTGACAGCCTTTGGATGGGTTGAGCCTTTGCGCAGCAGGCCTGATTAAGTTGCACATTATAGTTCTGCTCTAAATTTCTAATAGTACATT

Ace file of the UniGene biog3_v1.0_unigene15997 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2741	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutaredoxin family protein [Arabidopsis thaliana] gb\|AAD03427.1\| F3H7.9 gene product [Arabidopsis thaliana] emb\|CAB40029.1\| putative protein [Arabidopsis thaliana] emb\|CAB78186.1\| putative protein [Arabidopsis thaliana] gb\|AEE82911.1\| Glutaredoxin family	-	-	1.99965e-42	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	78%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	78%
Blast2go	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Glutaredoxin-2	IPR015450	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX84

Fln msg: your sequence is shorter than subject: 47 - 471

Fln protein: GMRFVPCLECSGSCKLVQDQNVVVRCPHCNENGLIQCPICSADATY*

Protein Length: 48

Fln nts: GGGATGAGATTTGTGCCCTGTTTAGAGTGCAGTGGAAGCTGTAAGCTTGTCCAGGATCAAAATGTTGTTGTGAGGTGTCCACACTGCAATGAGAATGGATTGATACAATGCCCCATATGCTCTGCTGATGCAACATATTGA___TAATCCTTAAAATCCTAGATTGGCAAACTCATCGGCTGATTGTGTTCGGATCATATCGGATGCTGACAGCCTTTGGATGGGTTGAGCCTTTGCGCAGCAGGCCTGATTAAGTTGCACATTATAGTTCTGCTCTAAATTTCTAATAGTACATT

Fln Alignment:

biogeco3_mira_c11923___GMRFVPCLECSGSCKLVQDQNVVVRCPHCNENGLIQCPIC
A9NX84__________________GVRFIPCMECSGSCKLVNDDNMVVRCPECNENGLIQCPIC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain