SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15974

Length: 311 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15974
GCTGGCCCTGGCGCACGACTACAGGTTCATGAGAGGAGACCGATCTGTGCTCTACATGAGCGAGCTTGACATCGGTTTCAAGCTTCCCAAGGGTTTCATGGCTGTCATACGGAGCAAGCTCATGCCCGGAACCCTAAGGGATGTGGTGTTGGGCGCCCGCAAGTTTAGTGCTCAGATGGCTCTGGAAGGCGGGATCGTGGATTCTGTTTACGCGGACTCGCCTCAGACGTTAGAGGCCGCCATTAAAGAAGCTCAGAAATTGGCAGGAAGGGGTTGGAAGAAGGAGATTTACAGTGAACTCAGGTTACATT

Ace file of the UniGene biog3_v1.0_unigene15974 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene80499	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	delta(3), delta(2)-enoyl CoA isomerase 1 [Arabidopsis thaliana] gb\|AAB60906.1\| F5I14.5 gene product [Arabidopsis thaliana] gb\|AAR20752.1\| At1g65520 [Arabidopsis thaliana] gb\|AAS92341.1\| At1g65520 [Arabidopsis thaliana] gb\|AEE34392.1\| delta(3), delta(2)-en	-	-	3.0e-21	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	carnitinyl- dehydratase-like	-	-	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Crotonase, core	IPR001753	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYU1

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 103 - 235

Fln protein: LALAHDYRFMRGDRSVLYMSELDIGFKLPKGFMAVIRSKLMPGTLRDVVLGARKFSAQMALEGGIVDSVYADSPQTLEAAIKEAQKLAGRGWKKEIYSELRLH

Protein Length: 104

Fln nts: GCTGGCCCTGGCGCACGACTACAGGTTCATGAGAGGAGACCGATCTGTGCTCTACATGAGCGAGCTTGACATCGGTTTCAAGCTTCCCAAGGGTTTCATGGCTGTCATACGGAGCAAGCTCATGCCCGGAACCCTAAGGGATGTGGTGTTGGGCGCCCGCAAGTTTAGTGCTCAGATGGCTCTGGAAGGCGGGATCGTGGATTCTGTTTACGCGGACTCGCCTCAGACGTTAGAGGCCGCCATTAAAGAAGCTCAGAAATTGGCAGGAAGGGGTTGGAAGAAGGAGATTTACAGTGAACTCAGGTTACATT

Fln Alignment:

biogeco3_mira_c11893___LALAHDYRFMRGDRSVLYMSELDIGFKLPKGFMAVIRSKLMPGTLRDVVLGARKFSAQMALEGGIVDSVYADSPQTLEAAIKEAQKLAGRGWKKEIYSELRL
A9NYU1__________________VALAHDYRFMRGDRSVLYMSELDIGMKLPRSLMAVIRSKLLPGTLRDVVLGARKFSAQMALEGGIVDSVYADSPQTLEAAVSEAQKLAGRGWKKEIYSELRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain