SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15966

Length: 368 nt

UniGene Fasta

>biog3_v1.0_unigene15966
AATGTCTCCAGAAGAACTTGAGAAGCGTAGAGTGGAAATTAAGGGTCTAATGGAGGATTTGCGGATGCCATCAGATGCTGAGCTAATGAAAATAGCAATTGCAGACATCAATAATTCTTCACTTTCGACAGAAGGCCATTATCGAGCTCTACTTGAACTTCTAGAGCTTGTAGGACCTATTGATAATGCAAATGATTTGAATAAACTTGGAGGACTCACTGCACTTGTCAAAGAACTTAACAGAGAAGAGAAAGAACTGCGCACAATTGCTGCATGGGTTCTTGGACAAGCAAGTAATAACAATCCTGTTGTCCAAAAGCAGATTAATTTGAACTAAATGTCTTGCCAAAATTAATGGGGATGACATT

Ace file of the UniGene biog3_v1.0_unigene15966

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1213	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sil1, putative n=1 Tax=Ricinus communis RepID=B9RG44_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	nucleotide exchange factor sil1	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-
Sma3	Nucleotide exchange factor Fes1	IPR013918	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNT2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 168 aas, your sequence is shorter than subject: 112 - 359

Fln protein: MSPEELEKRRVEIKGLMEDLRMPSDAELMKIAIADINNSSLSTEGHYRALLELLELVGPIDNANDLNKLGGLTALVKELNREEKELRTIAAWVLGQASNNNPVVQKQINLN*

Protein Length: 113

Fln nts: AATGTCTCCAGAAGAACTTGAGAAGCGTAGAGTGGAAATTAAGGGTCTAATGGAGGATTTGCGGATGCCATCAGATGCTGAGCTAATGAAAATAGCAATTGCAGACATCAATAATTCTTCACTTTCGACAGAAGGCCATTATCGAGCTCTACTTGAACTTCTAGAGCTTGTAGGACCTATTGATAATGCAAATGATTTGAATAAACTTGGAGGACTCACTGCACTTGTCAAAGAACTTAACAGAGAAGAGAAAGAACTGCGCACAATTGCTGCATGGGTTCTTGGACAAGCAAGTAATAACAATCCTGTTGTCCAAAAGCAGATTAATTTGAACTAAATGTCTTGCCAAAATTAATGGGGATGACATT

Fln Alignment:

biogeco3_mira_c11884___MSPEELEKRRVEIKGLMEDLRMPSDAELMKIAIADINNSSLSTEGHYRALLELLELVGPIDNANDLNKLGGLTALVKELNREEKELRTIAAWVLGQASNNNPVVQKQI
A9NNT2__________________LSPEELEKRRVEIKDLMEDLRMPSDAELMKIAIADINNSSLSTEDHSRALHELLELVGPIDNANDLNKLGGLTAIIQELNREEKELRTIAAWVLGKSSNNNPVVQKQI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain