SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15961

Length: 280 nt

UniGene Fasta

>biog3_v1.0_unigene15961
AATGTCCCTGTATGTCTCTCTCCCTCGGGATGCAAACCACAGTGGTGGCCTCCTCTCCCGCCATGGCAAAGGAGGTTCTCAAAACCCATGACCAACTCCTTGCTGGCCGGACTGTCGTGCAATCACTTAAGGCCATTTCCCACGAGAAGTCCTCAATAGTTTATGCTCAGTGTGGATCTCACTGGCGTATGCTCAGGCGTATATCCAATATGGAGCTCTTCTCTGTCAAGAGGCTAGAAGCTCTGCAACACCTGAGAAGAGATCAGTGGATCGAACGATT

Ace file of the UniGene biog3_v1.0_unigene15961

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8433	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450 [Verbena x hybrida]	-	-	2.00386e-43	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	cytochrome p450	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	62%
Blast2go	heme binding	GO:0020037	Molecular Function	62%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	62%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	62%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKD2

Fln msg: Distance to subject end: 351 aas, your sequence is shorter than subject: 89 - 441

Fln protein: MSLSLGMQTTVVASSPAMAKEVLKTHDQLLAGRTVVQSLKAISHEKSSIVYAQCGSHWRMLRRISNMELFSVKRLEALQHLRRDQWIER

Protein Length: 90

Fln nts: AATGTCCCTGT_-_ATGTCTCTCTCCCTCGGGATGCAAACCACAGTGGTGGCCTCCTCTCCCGCCATGGCAAAGGAGGTTCTCAAAACCCATGACCAACTCCTTGCTGGCCGGACTGTCGTGCAATCACTTAAGGCCATTTCCCACGAGAAGTCCTCAATAGTTTATGCTCAGTGTGGATCTCACTGGCGTATGCTCAGGCGTATATCCAATATGGAGCTCTTCTCTGTCAAGAGGCTAGAAGCTCTGCAACACCTGAGAAGAGATCAGTGGATCGAACGATT

Fln Alignment:

biogeco3_mira_c11874___MSLSLGMQTTVVASSPAMAKEVLKTHDQLLAGRTVVQSLKAISHEKSSIVYAQCGSHWRMLRRISNMELFSVKRLEALQHLRRDQ
B8LKD2__________________MTVSLGMKTTVVASSSAMAKEVLKTHDHILSGRNLIQAAKALSHYKTSIVFGQYGSHWRMLRRVSVNELFSVERLEALQHHRRDQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain