SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15938

Length: 358 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15938
AATGTAGGTCAGGGTTTTTGTTTTTAAAATATTTATCTGCTGTATTTGGAGTCCTGGTAACGGAAAATCAGCTCGCTCGCTCAAATGACTGAGAAAAGAGAAGTCGGGGTAGAAGGCGGCATTAGTGCTAATTGCAGCACGGATTTGGGTCTTCTCATAAACCAGAAAACTGGACGGGTCCTCTATGCGGAGGCGGGTAAGGATTTTGTAGATGTCCTGTTGTCTTTTCTTTTGCTGCCGACTGGTGCTATCGTCCGACTTATGCGGGAACAGGGCACGGCGTCTTCCAAGAATGTGGGAGGCATCAGTAACGTTTACGACAGCGTCCACAACCTGAATGAGGCCTATATGACTACTG

Ace file of the UniGene biog3_v1.0_unigene15938 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9323	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF674 domain containing protein	-	-	3.0e-24	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	uncharacterized protein loc100798512	-	-	1.68156e-43	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF674	IPR007750	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPN4

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 91 - 243

Fln protein: MTEKREVGVEGGISANCSTDLGLLINQKTGRVLYAEAGKDFVDVLLSFLLLPTGAIVRLMREQGTASSKNVGGISNVYDSVHNLNEAYMTT

Protein Length: 92

Fln nts: AATGTAGGTCAGGGTTTTTGTTTTTAAAATATTTATCTGCTGTATTTGGAGTCCTGGTAACGGAAAATCAGCTCGCTCGCTCAA_-_ATGACTGAGAAAAGAGAAGTCGGGGTAGAAGGCGGCATTAGTGCTAATTGCAGCACGGATTTGGGTCTTCTCATAAACCAGAAAACTGGACGGGTCCTCTATGCGGAGGCGGGTAAGGATTTTGTAGATGTCCTGTTGTCTTTTCTTTTGCTGCCGACTGGTGCTATCGTCCGACTTATGCGGGAACAGGGCACGGCGTCTTCCAAGAATGTGGGAGGCATCAGTAACGTTTACGACAGCGTCCACAACCTGAATGAGGCCTATATGACTACTG

Fln Alignment:

biogeco3_mira_c11841___DLGLLINQKTGRVLYAEAGKXXXXXXXXXXXLPTGAIVRLMREQGTASSKNVGGISNVYDSVHNLNEAYM
B8LPN4__________________NLRLLINDKTGKILYAEAGKDFVDLLFSFLTLPIGSVMKLLSEFKRA--KTVGSLTNLYNSVEKLQTMFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain