SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15923

Length: 1407 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene15923 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17388	3/48
SustainPine v2.0	sp_v2.0_unigene60441	44/48
SustainPine v2.0	sp_v2.0_unigene61168	1/48

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome c1 precursor [Solanum tuberosum]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	cytochrome c1- heme mitochondrial-like	-	-	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	93%
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	0.0	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c1	IPR002326	-	0.0	-
Sma3	Cytochrome c domain	IPR009056	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMY7

Fln msg:

Fln protein: MWGALRQKCGLTTLVSSLNHAQTSEKLVSMASTPLINSYTAAKEDAAAFTSKQNQKGGDSVGMKSLKALVLLGAGVSGLFGFAGIAAADEAEHGLECPSYPWPHKGILSSYDHASIRRGHQVFQQVCASCHSMSLVTYRDLVGVAYTEEEAKALAAEIEVEDGPNDEGEMFTRPGKLSDRFPKPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFTGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVTFLSWAAEPEMEERKLMGFKWIFIFSLALLQAGFYRRWKWAPVKSRKMILDVVN*

Protein Length: 333

Fln nts: TAAAAACATGCCAAAAGGGGCTGCAAGGCATGACCCAGACTTCCTTCGGCCCTAGGGTTTTGTGGGGTATGATCAAGTGTTTGGTTGGCGAGGAACAAAGTCTTTTTTGGATCGTTTTGGGAGCGCCGTCCCTCCCGCATTGGATGCAAATCTGCCATTAACGTCCTTCCTCAATCTTGTCAGCTAAACTCCAAGGAAAGAAA_-_ATGTGGGGTGCTTTGCGGCAAAAATGTGGCTTGACAACTCTAGTGTCTTCATTGAATCATGCTCAAACTTCGGAGAAGTTGGTGTCTATGGCATCCACACCCTTAATAAATTCATACACTGCTGCTAAAGAGGATGCTGCGGCATTTACTTCCAAGCAAAATCAGAAGGGAGGGGACTCTGTTGGCATGAAGTCACTAAAGGCTTTGGTACTTCTTGGGGCAGGGGTGTCTGGCTTATTTGGATTTGCAGGTATCGCAGCTGCGGATGAGGCAGAACATGGCTTAGAGTGCCCAAGCTACCCGTGGCCCCATAAGGGAATTCTAAGTTCCTATGATCATGCATCAATTCGGCGTGGACATCAGGTCTTTCAACAAGTTTGCGCATCTTGCCATAGTATGTCGTTGGTCACCTACCGTGACCTTGTTGGAGTTGCCTATACTGAAGAAGAAGCAAAAGCTTTAGCAGCAGAAATAGAAGTCGAGGATGGACCAAATGATGAAGGTGAAATGTTTACACGACCTGGAAAACTAAGTGATCGTTTTCCTAAGCCTTATGCTAATGAACAGGCGGCAAGATTTGCCAATGGAGGGGCCTATCCTCCAGACCTTAGCCTGATTACAAAGGCACGCCATAATGGTCAGAACTATGTATTTTCCTTGCTTACTGGATACCGTGATCCGCCAGCTGGGGTTTCGATTCGAGAGGGATTGCATTATAATCCTTATTTCACCGGCGGTGCAATAGCCATGCCCAAAATGCTTAATGATGGTGCGGTTGAGTATGAAGATGGAACACCTGCAACAGAATCTCAGATGGGAAAAGATGTTGTCACGTTCTTGTCCTGGGCAGCTGAGCCCGAAATGGAGGAGCGAAAACTGATGGGGTTCAAATGGATATTTATTTTTTCACTTGCTCTTCTTCAAGCTGGTTTCTATAGGAGATGGAAATGGGCTCCTGTTAAATCACGTAAAATGATTCTCGATGTTGTGAATTAA___CTTAGTTTTTTGACCTGTATGCTTTGGTGCACTGGAAGGTCCAAAGCGTTATTCTATTTTTAAAGAAAATTTTCTTTTCTCAAATGTAACATGTTATTTGAATTGTCAATAAAGTTCAGAACTAGCATTATGTTTGGTATGGAATATACCACAATGCTATGCGACAATTCTTTGCTTAGAATGTTACATTTTTATCATTGACTACATT

Fln Alignment:

biogeco3_mira_c11825___MWGALRQKCGLTTLVSSLNHAQTSEKLVSMASTPLINSYTAAKEDAAAFTSKQNQKGGDSVGMXXXXXXXXXXXXXXXXXXXXGIAAADEAEHGLECPSYPWPHKGILSSYDHASIRRGHQVFQQVCASCHSMSLVTYRDLVGVXXXXXXXXXXXXXXXXEDGPNDEGEMFTRPGKLSDRFPKPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFTGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVTFLSWAAEPEMEERKLMGFKWIFIFSLALLQAGFYRRWKWAPVKSRKMILDVVN
A9NMY7__________________MWGALRQKCGLTTLVSSLNHAQVSERLVSMASTPLIKSSTAAKEDAAAFTSKQNQNGGDSVGMKSLKALALLGAGVSGLFGFAGIAATDETEHGLDCPSYPWPHKGILSSYDHASIRRGHQVFQQVCASCHSMSLVTYRDLVGVAYTEEEAKALAAEIEVEDGPNDEGEMFSRPGKLSDRFPKPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATESQMGKDVVTFLSWAAEPEMEERKLMGFKWIFIFSLALLQAGFYRRWKWAPVKSRKMILDVVN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1219			25	75	0.996473
1248		20	80		0.995493
1250	80			20	0.995493
1251			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain