SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15902

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene15902
AAGAGAGACCTTTTCCTTACGAAATATTTTTCACCAATTCTCCTAGAGGCATTTTCGCTGACATTTTTTGGAGAGTGGGGTGATAAGAGCCAGCTTGCTACAATAGGACTGGCGGCAGACGAAAATCCAGTTGGTGTAGTTCTCGGGGGCATTATAGGGCACACTCTTTGTACGGCTGCTGCTGTGTTTGGAGGGAAGTCTTTGGCAGCTCGGATATCTGAAAGAATGGTTGCAATTTC

Ace file of the UniGene biog3_v1.0_unigene15902

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13735	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0016 protein 5 [Arabidopsis thaliana] sp\|Q9SX28.1\|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb\|AAD49978.1\|AC008075_11 Is a member of PF\|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj\|BAC43336.1\| putative tran	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	transmembrane protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	82%
Blast2go	response to karrikin	GO:0080167	Biological Process	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0016	IPR001727	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU88

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 79 - 233

Fln protein: KRDLFLTKYFSPILLEAFSLTFFGEWGDKSQLATIGLAADENPVGVVLGGIIGHTLCTAAAVFGGKSLAARISERMVAI

Protein Length: 80

Fln nts: AAGAGAGACCTTTTCCTTACGAAATATTTTTCACCAATTCTCCTAGAGGCATTTTCGCTGACATTTTTTGGAGAGTGGGGTGATAAGAGCCAGCTTGCTACAATAGGACTGGCGGCAGACGAAAATCCAGTTGGTGTAGTTCTCGGGGGCATTATAGGGCACACTCTTTGTACGGCTGCTGCTGTGTTTGGAGGGAAGTCTTTGGCAGCTCGGATATCTGAAAGAATGGTTGCAATTTC

Fln Alignment:

biogeco3_mira_c11796___FLTKYFSPILLEAFSLTFFGEWGDKSQLATIGLAADENPVGVVLGGIIGHTLCTAAAVFGGKSLAARISERMVAI
A9NU88__________________FLTQFFSPILLEAFSLTFFGEWGDKSQIATIGLAADENPVGVVLGGILGHTLCTAAAVFGGKTLAARISERMVAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain