SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15897

Length: 529 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15897
TTAAGCATTCTGGCTTGAAGGTGGAAGACCTTTATGCTGTAGAGTTGATAGGTGGAGCGACTCGCATGCCGAAATTGCAGGCATTGCTCCAAGAATTTCTTGGCAGAAAAGACTTAGATAAGCATCTTGATGCTGATGAAGCTGTAGTGCTCGGATCAGCACTTCATGCTGCAAATTTGAGTGATGGAATCAAGCTAACCCGCAAGTTAGGAATGATTGATGGTGCAACATATGGTATCATACTTGAATTGAATAGTCCTGAACTAGATAATGAAGAAAGTAATCAACAAGACTTATCCCAAGGATGAAGAAGCTTCCGAGCAAGGCATTCAAGTCTGTAAAGTATAGCAAGGACTTTGAAGTTTCACTTCAATATGATCCTTCTGATATACTACCACCAGGGATTTCCTCTAACAAAATTGCAACTTACCACGTTTCAGGCTTAACTGATACCTACACAAAGTATGCAACACGAAACCTCTCTGCACCGATAAAGACAAACTTACACTTTTCCCTGAGCAGAAGTGGT

Ace file of the UniGene biog3_v1.0_unigene15897 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26042	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	hypoxia up-regulated 1 [Arabidopsis thaliana] gb\|AEE83781.1\| hypoxia up-regulated 1 [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	hypoxia up-regulated protein 1-like	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3		IPR004348	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 149 aas, your sequence is shorter than subject: 102 - 652

Fln protein: KHSGLKVEDLYAVELIGGATRMPKLQALLQEFLGRKDLDKHLDADEAVVLGSALHAANLSDGIKLTRKLGMIDGATYGIILELNSPELDNEESNQQDLSQG*

Protein Length: 103

Fln nts: TTAAGCATTCTGGCTTGAAGGTGGAAGACCTTTATGCTGTAGAGTTGATAGGTGGAGCGACTCGCATGCCGAAATTGCAGGCATTGCTCCAAGAATTTCTTGGCAGAAAAGACTTAGATAAGCATCTTGATGCTGATGAAGCTGTAGTGCTCGGATCAGCACTTCATGCTGCAAATTTGAGTGATGGAATCAAGCTAACCCGCAAGTTAGGAATGATTGATGGTGCAACATATGGTATCATACTTGAATTGAATAGTCCTGAACTAGATAATGAAGAAAGTAATCAACAAGACTTATCCCAAGGATGAAGAAGCTTCCGAGCAAGGCATTCAAGTCTGTAAAGTATAGCAAGGACTTTGAAGTTTCACTTCAATATGATCCTTCTGATATACTACCACCAGGGATTTCCTCTAACAAAATTGCAACTTACCACGTTTCAGGCTTAACTGATACCTACACAAAGTATGCAACACGAAACCTCTCTGCACCGATAAAGACAAACTTACACTTTTCCCTGAGCAGAAGTGGT

Fln Alignment:

biogeco3_mira_c11789___LYAVELIGGATRMPKLQALLQEFLGRKDLDKHLDADEAVVLGSALHAANLS-DGIKLTRKLGMIDGATYGIILE
B8LRY5__________________IHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain