SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15885

Length: 293 nt

UniGene Fasta

>biog3_v1.0_unigene15885
AATGTAGCCTTCAAGGGTTGGTACTCAGTGGTCAGGCTCTGAGAATAGAGTTTTGCAAAGGGGGATAGCCATCTTTCATCAAGTCATCATGCAGAAGAACATCCAAGACTGCGAGATGATAGGCGTCTTGGTGAATTTGTTGGCTTCTCAGGTCTCAGAGATTCAAGAGTCCCAGGACCCAATTCTGATGCATCTTCTGATAAACATAAAGGGGATAAGGACGGAGAGCCAAGTGAAGTTTTGTGGATACGCTTTCCAGGTTACATGAAGGTGGATGAAATGAGTTTGAGAAA

Ace file of the UniGene biog3_v1.0_unigene15885

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6660	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb\|AEE83159.1\| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	59%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Spen paralogue and orthologue SPOC, C-terminal	IPR012921	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKJ3

Fln msg: Overlapping hits, possible frame ERROR between 62 and 52, Distance to subject end: 819 aas, your sequence is shorter than subject: 97 - 1019

Fln protein: CSLQGLVLSGQALRIExxxxxDSHLSSSHHAEEHPRLRDDRRLGEFVGFSGLRDSRVPGPNSDASSDKHKGDKDGEPSEVLWIRFPGYMKVDEMSLR

Protein Length: 98

Fln nts: AATGTAGCCTTCAAGGGTTGGTACTCAGTGGTCAGGCTCTGAGAATAGAGxxxxxxxxxxxxxxxGATAGCCATCTTTCATCAAGTCATCATGCAGAAGAACATCCAAGACTGCGAGATGATAGGCGTCTTGGTGAATTTGTTGGCTTCTCAGGTCTCAGAGATTCAAGAGTCCCAGGACCCAATTCTGATGCATCTTCTGATAAACATAAAGGGGATAAGGACGGAGAGCCAAGTGAAGTTTTGTGGATACGCTTTCCAGGTTACATGAAGGTGGATGAAATGAGTTTGAGAAA

Fln Alignment:

biogeco3_mira_c11775___SLQGLVLSGQALRIExxxxDXXXXXXXXXXXXPRLRDDRRLGEFVGFSGLRDSRVPGPNSDASSDKHKGDKDGEPSEVLWIRFPGYMKVDEMSLR
B8LKJ3__________________SLQGLVLSGLALRIExxxxDSHLSSSHHADEHSRLRDDRRLAEVVGFSGLRDSRVPGPNSDASSDKHKEDKDAEPSEVLWIGFPSYMEIDEMGLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain