SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15827

Length: 266 nt

UniGene Fasta

>biog3_v1.0_unigene15827
AATGTATCTTGGGCGACAAGGTGGAGAAGGTAGTGGTTTCGGATCGTATTGTGGACTCTCCTTGCTGTCTGGTGACTGGCGAGTACGGATGGACGGCGAACATGGAGAGAATAATGAAGGCCCAGGCCCTCCGCGACAGCTCCATGTCGTCCTACATGTCCAGCAAGAAAACGATGGAGATTAACCCTGAGAACGCCATCATGGAGGAGCTGAGGAAGAGAGCCGAGGCTGACAAGCACGACAAATCTGTGAAGGATCTGGTGATG

Ace file of the UniGene biog3_v1.0_unigene15827

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17253	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	heat shock protein 90	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	92%
Blast2go	response to heat	GO:0009408	Biological Process	92%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	cell wall	GO:0005618	Cellular Component	92%
Blast2go	cytosol	GO:0005829	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMS8

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 88 - 209

Fln protein: CILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENAIMEELRKRAEADKHDKSVKDLVM

Protein Length: 89

Fln nts: AATGTATCTTGGGCGACAAGGTGGAGAAGGTAGTGGTTTCGGATCGTATTGTGGACTCTCCTTGCTGTCTGGTGACTGGCGAGTACGGATGGACGGCGAACATGGAGAGAATAATGAAGGCCCAGGCCCTCCGCGACAGCTCCATGTCGTCCTACATGTCCAGCAAGAAAACGATGGAGATTAACCCTGAGAACGCCATCATGGAGGAGCTGAGGAAGAGAGCCGAGGCTGACAAGCACGACAAATCTGTGAAGGATCTGGTGATG

Fln Alignment:

biogeco3_mira_c11691___ILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXXKKTMEINPENAIMEELRKRAEADKHDKSVKDLVM
A9NMS8__________________ILGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENPIMDELRKRAEVDKNDKSVKDLVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain