SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15815

Length: 285 nt

UniGene Fasta

>biog3_v1.0_unigene15815
ATGGTTGGTCTCATTAGTAGGTCACAGTTGAAGGGATCCTTGCCAAGACTCTTACCGGCAATATTGGGATTGTGTACGATTGCGCTCCCTTCAGACACTGTTGAACTCGAGCATGCGCCGTGCTTCATTTTCAGCAATGGGATCATTATGCAAATTTGGAGTTGGAGCACAGCATGAAGCTTTTTTAGAGCAGGTTCATGCTTCTCTACCACGGTTGATTTTCCATGTGCAAGATGATGAACTTAATGTTCGTCAGGCATGCAAGGTACTTTGCGACAAATCTTG

Ace file of the UniGene biog3_v1.0_unigene15815

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10983	1/2
SustainPine v2.0	sp_v2.0_unigene70275	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	57%
Blast2go	low quality protein: heat repeat-containing protein 7a homolog	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9MTI7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 134 aas, your sequence is shorter than subject: 94 - 1076

Fln protein: WLVSLVGHS*RDPCQDSYRQYWDCVRLRSLQTLLNSSMRRASFSAMGSLCKFGVGAQHEAFLEQVHASLPRLIFHVQDDELNVRQACKVLCDKS

Protein Length: 95

Fln nts: ATGGTTGGTCTCATTAGTAGGTCACAGTTGAAGGGATCCTTGCCAAGACTCTTACCGGCAATATTGGGATTGTGTACGATTGCGCTCCCTTCAGACACTGTTGAACTCGAGCATGCGCCGTGCTTCATTTTCAGCAATGGGATCATTATGCAAATTTGGAGTTGGAGCACAGCATGAAGCTTTTTTAGAGCAGGTTCATGCTTCTCTACCACGGTTGATTTTCCATGTGCAAGATGATGAACTTAATGTTCGTCAGGCATGCAAGGTACTTTGCGACAAATCTTG

Fln Alignment:

biogeco3_mira_c11669___VRLRSLQTLLNSSMRRASFSAMGSLCKFGVGAQHEAFLEQVHASLPRLIFHVQDDELNVRQACK
B9MTI7__________________VRLRNLQISMDVKMRADAFAAFGALSKYGVGAQREIFLEQIHAAIPRLVLHLHDDDLSVRQACR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain