SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15804

Length: 217 nt

UniGene Fasta

>biog3_v1.0_unigene15804
CCTACATCATGATTTTATGCCACAGGTCCTTCACTGTGATATCAAATCCAACAATATACTTTTGGATTCCGACTATGAGCCTAAGATTGCAGACTTTGGCGTTGCCAAGATATTGGGAGACTCTGCACATTCTCAGTCCATGACTTCTGCTGTAGGGACTTTTGGATTCATCGCTCCTGAATATGCTTACTCTGCAAAAGTAATGAGAAGATTGATG

Ace file of the UniGene biog3_v1.0_unigene15804

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6633	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like protein kinase HSL1 n=2 Tax=Arabidopsis RepID=HSL1_ARATH	-	-	39%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	49%
Blast2go	receptor-like protein kinase hsl1	-	-	56%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	56%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	56%
Blast2go	positive regulation of seed germination	GO:0010030	Biological Process	56%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	56%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	56%
Blast2go	cell part	GO:0044464	Cellular Component	56%
Blast2go	regulation of seed maturation	GO:2000034	Biological Process	56%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 160 aas, your sequence is shorter than subject: 72 - 1145

Fln protein: LHHDFMPQVLHCDIKSNNILLDSDYEPKIADFGVAKILGDSAHSQSMTSAVGTFGFIAPEYAYSAKVMRRLM

Protein Length: 73

Fln nts: CCTACATCATGATTTTATGCCACAGGTCCTTCACTGTGATATCAAATCCAACAATATACTTTTGGATTCCGACTATGAGCCTAAGATTGCAGACTTTGGCGTTGCCAAGATATTGGGAGACTCTGCACATTCTCAGTCCATGACTTCTGCTGTAGGGACTTTTGGATTCATCGCTCCTGAATATGCTTACTCTGCAAAAGTAATGAGAAGATTGATG

Fln Alignment:

biogeco3_mira_c11654___LHHDFMPQVLHCDIKSNNILLDSDYEPKIADFGVAKILGDSAHSQSMTSAVGTFGFIAPEYAYSAKVMRRL
Q9FEU2__________________LHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVDSADFNRSSTTVAGSYGYIAPEYGYTMKITQKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain