SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15801

Length: 292 nt

UniGene Fasta

>biog3_v1.0_unigene15801
AATGTGTATTTCTGAGCTAGGTGTTCCTCTTACTCGAGAACCAGGATTCCATCAGTGGGATATTCGTGGCAATGCACATGGGCTTTTGGCCGCTCATCCAGTTACTCCTTTTGTCTCCTTCCACCATGTGGAAGCTATTAACCCGATATTTCCACAGCATAATTCACTGGATGGTCTGAAACATCTCATGAAAGCAATGCGGACAGATCCTACTGGCTTTTTACAGCAGTCAATATGTTACGACCATAAGAGATAGCTTACCTTTTCGATCTCAAATGGTTATGTTGTACAA

Ace file of the UniGene biog3_v1.0_unigene15801

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25961	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-1,3-n-acetylglucosaminyltransferase radical fringe, putative n=1 Tax=Ricinus communis RepID=B9RZ00_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	glycosyltransferase-like protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Fringe-like	IPR003378	-	-
Sma3	POX	IPR006563	-	-
Sma3	Protein of unknown function DUF604	IPR006740	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPP2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 85 - 512

Fln protein: MCISELGVPLTREPGFHQWDIRGNAHGLLAAHPVTPFVSFHHVEAINPIFPQHNSLDGLKHLMKAMRTDPTGFLQQSICYDHKR*

Protein Length: 86

Fln nts: AATGTGTATTTCTGAGCTAGGTGTTCCTCTTACTCGAGAACCAGGATTCCATCAGTGGGATATTCGTGGCAATGCACATGGGCTTTTGGCCGCTCATCCAGTTACTCCTTTTGTCTCCTTCCACCATGTGGAAGCTATTAACCCGATATTTCCACAGCATAATTCACTGGATGGTCTGAAACATCTCATGAAAGCAATGCGGACAGATCCTACTGGCTTTTTACAGCAGTCAATATGTTACGACCATAAGAGATAGCTTACCTTTTCGATCTCAAATGGTTATGTTGTACAA

Fln Alignment:

biogeco3_mira_c11650___CISELGVPLTREPGFHQWDIRGNAHGLLAAHPVTPFVSFHHVEAINPIFPQHNSLDGLKHLMKAMRTDPTGFLQQSICYDHKR*LTFSISNGYVVQ
B8LPP2__________________CISELGIPLTREPGFHQWDVRGNAFGLLAAHPVAPFVSMHHLETIDPVFPQHNSLDGLKLLVKAMKTEPISFLQRSICYDRERRLTFSVSMGYVVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain