SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15741

Length: 318 nt

UniGene Fasta

>biog3_v1.0_unigene15741
GCTGGCCTTCGTTTGATGATGTTGACGGGCGATCATGCATCAAGTGCATCACGGGTTGCTAAGGCTGTTGGTATTGATGAGGTCTATTCTGGTCTTAAGCCTGAGGATAAGCTCCATCAAGTAAAATCTCTGTCACGCAATGGGGCTGGGGGTTTAATTATGGTGGGTGATGGAATAAATGATGCGCCAGCTTTGGCTGCTGCAACTGTGGGGATTGTTCTTGCACAACGTGCAAGTGCAACGGCGGTGGCTGTAGCAGATGTTCTTCTCTTAGAGGATAATATCAACAGTGTACCTTTCATTATTGCAAAGGACATT

Ace file of the UniGene biog3_v1.0_unigene15741

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10600	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative cadmium/zinc-transporting ATPase HMA1 [Arabidopsis thaliana] sp\|Q9M3H5.2\|AHM1_ARATH RecName: Full=Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic; Flags: Precursor emb\|CAB16773.1\| Cu2+-transporting ATPase-like protein [Arabidopsis t	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	cadmium resistance protein	-	-	80%

Source	ECs	Term	Type	Identity
Blast2go	Copper-exporting ATPase.	EC:3.6.3.4	-	80%
Blast2go	Cadmium-transporting ATPase.	EC:3.6.3.46	-	80%
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	80%
Blast2go	Zinc-exporting ATPase.	EC:3.6.3.5	-	80%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion homeostasis	GO:0055069	Biological Process	80%
Blast2go	response to light intensity	GO:0009642	Biological Process	80%
Blast2go	calcium ion transport	GO:0006816	Biological Process	80%
Blast2go	cellular copper ion homeostasis	GO:0006878	Biological Process	80%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	80%
Blast2go	response to toxin	GO:0009636	Biological Process	80%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	80%
Blast2go	zinc transporting ATPase activity	GO:0015633	Molecular Function	80%
Blast2go	copper-exporting ATPase activity	GO:0004008	Molecular Function	80%
Blast2go	cadmium-transporting ATPase activity	GO:0015434	Molecular Function	80%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	80%
Blast2go	zinc-exporting ATPase activity	GO:0016463	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating	IPR006404	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 106 - 998

Fln protein: AGLRLMMLTGDHASSASRVAKAVGIDEVYSGLKPEDKLHQVKSLSRNGAGGLIMVGDGINDAPALAAATVGIVLAQRASATAVAVADVLLLEDNINSVPFIIAKDI

Protein Length: 107

Fln nts: GCTGGCCTTCGTTTGATGATGTTGACGGGCGATCATGCATCAAGTGCATCACGGGTTGCTAAGGCTGTTGGTATTGATGAGGTCTATTCTGGTCTTAAGCCTGAGGATAAGCTCCATCAAGTAAAATCTCTGTCACGCAATGGGGCTGGGGGTTTAATTATGGTGGGTGATGGAATAAATGATGCGCCAGCTTTGGCTGCTGCAACTGTGGGGATTGTTCTTGCACAACGTGCAAGTGCAACGGCGGTGGCTGTAGCAGATGTTCTTCTCTTAGAGGATAATATCAACAGTGTACCTTTCATTATTGCAAAGGACATT

Fln Alignment:

biogeco3_mira_c11570___GLRLMMLTGDHASSASRVAKAVGIDEVYSGLKPEDKLHQVKSLSRNGAGGLIMVGDGINDAPALAAATVGI
B8LQ20__________________GILPIMVTGDNWTTARAVAQELGIEDVKAEVIPAGKAEVIRSLQKDGTM-VAMVGDGINDSPALAAADVGM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain