SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15727

Length: 206 nt

UniGene Fasta

>biog3_v1.0_unigene15727
AATGTACTCAAATACAGAATTTTACCATGATGGTGTTGTTACCAGTGTCCTCTTGTGAGGTACCAGCTTATCAGGCCGAATGCGAAAGACTTGAATGAAGGCTGCAAATGGCTGGATATGTTTGAGGATGTTCGGGCTGTAATCTTTTGCATTGGTCTCAGTGATTATGACCAGATGTGGGCTGAGAGTAATGGTCACCTCAGAAA

Ace file of the UniGene biog3_v1.0_unigene15727

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1767	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9T5D0_RICCO	-	-	60%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	72%
Blast2go	gtp-binding protein alpha	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	76%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	76%
Blast2go	GTP binding	GO:0005525	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Guanine nucleotide binding protein (G-protein), alpha subunit	IPR001019	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Plant G-protein, alpha subunit	IPR002976	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	G protein alpha subunit, helical insertion	IPR011025	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GZK8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 147 aas, your sequence is shorter than subject: 68 - 349

Fln protein: NVLKYRILP*WCCYQCPLVRYQLIRPNAKDLNEGCKWLDMFEDVRAVIFCIGLSDYDQMWAESNGHLR

Protein Length: 69

Fln nts: AATGTACTCAAATACAGAATTTTACCATGATGGTGTTGTTACCAGTGTCCTCTTGTGAGGTACCAGCTTATCAGGCCGAATGCGAAAGACTTGAATGAAGGCTGCAAATGGCTGGATATGTTTGAGGATGTTCGGGCTGTAATCTTTTGCATTGGTCTCAGTGATTATGACCAGATGTGGGCTGAGAGTAATGGTCACCTCAGAAA

Fln Alignment:

biogeco3_mira_c11554___PLVRYQLIRPNAKDLNEGCKWLDMFEDVRAVIFCIGLSDYDQMW--AESNG
B9GZK8__________________PLTRYQLIRVNAKGMNEGCKWVEMFEDVQAVVFCVALSDYDQMWLVPESSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain