SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15691

Length: 212 nt

UniGene Fasta

>biog3_v1.0_unigene15691
GGCATTCAATTGTGAAAGATCTGCGAAGTAACTTATGCCAGAGTTCAGGGTCGAGTCGCGCTGGAAGATCATTTTCGGAACTCCAAGTTTGCTTGTGATACAGATGAGTATTTGCCTTTGGTATTCTCTCCACCTCGTAACGGGGAGCAGCTCTCAACTCCTGTGGTCATGGGCGGTCACATTGCTTCTCACAAAACCAGTAACAACACATT

Ace file of the UniGene biog3_v1.0_unigene15691

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6661	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein terminal ear1 homolog n=2 Tax=Oryza sativa RepID=EAR1_ORYSJ	-	-	9.80909e-45	61%
FL-Next	sp=Protein terminal ear1 homolog; Oryza sativa subsp. indica (Rice).	-	-	0.0	68%
Blast2go	terminal ear1	-	-	2.38221e-44	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	2.38221e-44	80%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	2.38221e-44	80%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA recognition motif 2	IPR007201	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A2WY46

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 68 aas, your sequence is shorter than subject: 70 - 680

Fln protein: GIQL*KICEVTYARVQGRVALEDHFRNSKFACDTDEYLPLVFSPPRNGEQLSTPVVMGGHIASHKTSNNT

Protein Length: 71

Fln nts: GGCATTCAATTGTGAAAGATCTGCGAAGTAACTTATGCCAGAGTTCAGGGTCGAGTCGCGCTGGAAGATCATTTTCGGAACTCCAAGTTTGCTTGTGATACAGATGAGTATTTGCCTTTGGTATTCTCTCCACCTCGTAACGGGGAGCAGCTCTCAACTCCTGTGGTCATGGGCGGTCACATTGCTTCTCACAAAACCAGTAACAACACATT

Fln Alignment:

biogeco3_mira_c11500___KICEVTYARVQGRVALEDHFRNSKFACDTDEYLPLVFSPPRNGEQLSTPVVMGG
A2WY46__________________KICQVTYARVQGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDGKLLTEPVPLVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain