SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15636

Length: 331 nt

UniGene Fasta

>biog3_v1.0_unigene15636
AGCTCTGCAAGCAGTACTATGCACCGCAAGGTCTGCTTAACTGAAAACAGAGCGCTGAGCTTGAGGAAACCCTCAAGCATTGCTGAGGCCACCGTTTATCTAAATAGCGCAACATAGGGCTTCAGAGAAATGGCAATGGCACAAGCATTCAGAGGCCGTGTCTTGCAAGCTGCCCGTTTGCTCGGCCGCAACATTCTGCCGGAGGATAAAAGCTTTGGAGCCGCTGCTTCTACATTGACGAGCTCTTAGCCTGCTCTCATCAAATGCCTTCATCTCTTTCTCTGTTGAACGGCGGCTAGCTGCTACAAATTCAACAATTGTGTTGCAATCT

Ace file of the UniGene biog3_v1.0_unigene15636

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene961	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair protein recA-like 3 [Arabidopsis thaliana] sp\|Q9ZUP2.2\|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gb\|ABM06015.1\| At2g19490 [Arabidopsis thaliana] gb\|AEC068	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	dna repair protein reca homolog mitochondrial-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	DNA recombination	GO:0006310	Biological Process	81%
Blast2go	DNA repair	GO:0006281	Biological Process	81%
Blast2go	SOS response	GO:0009432	Biological Process	81%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	81%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	81%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA recombination and repair protein RecA	IPR013765	-	-
Sma3		IPR001553	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRS8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 387 aas, your sequence is shorter than subject: 40 - 454

Fln protein: MAMAQAFRGRVLQAARLLGRNILPEDKSFGAAASTLTSS*

Protein Length: 41

Fln nts: AGCTCTGCAAGCAGTACTATGCACCGCAAGGTCTGCTTAACTGAAAACAGAGCGCTGAGCTTGAGGAAACCCTCAAGCATTGCTGAGGCCACCGTTTATCTAAATAGCGCAACATAGGGCTTCAGAGAA_-_ATGGCAATGGCACAAGCATTCAGAGGCCGTGTCTTGCAAGCTGCCCGTTTGCTCGGCCGCAACATTCTGCCGGAGGATAAAAGCTTTGGAGCCGCTGCTTCTACATTGACGAGCTCTTAGCCTGCTCTCATCAAATGCCTTCATCTCTTTCTCTGTTGAACGGCGGCTAGCTGCTACAAATTCAACAATTGTGTTGCAATCT

Fln Alignment:

biogeco3_mira_c11413___MAMAQAFRGRVLQAARLLGRNILPEDKSFG
B8LRS8__________________MAMALAFRCRVLQAARLFRPTILPEDKSFG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
125	33		66		0.997464
126	66			33	0.997467
128	66			33	0.997464
237	66	33			0.997476
239	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain