SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15624

Length: 264 nt

UniGene Fasta

>biog3_v1.0_unigene15624
AATGTAAGCATTTAAGGGAGCCCTTAACTGTTGGTGAATTATATGATATTTTTAGAAGAATACTGAACAATTTTCCAAGCAGTTCATTGCACTGGATAAATTATGTAATTCCAGAGAACGGATTGTTGTATCAAGAGCTTTCAACTGGTACCTCAACCTTTGGTGTTTCTCAATTGCCACGTGCGGTTCTTAGTCCCTTTGAAACTGAGAGGGCAAAGCTAGAGCAGTTGATGGCAGAGACTCGTGATGTTTTGTTAAGACATT

Ace file of the UniGene biog3_v1.0_unigene15624

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4395	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	peroxin 3 [Arabidopsis thaliana] sp\|Q8S9K7.1\|PEX32_ARATH RecName: Full=Peroxisome biogenesis protein 3-2; AltName: Full=Peroxin-3-2; Short=AtPEX3-2 gb\|AAL75911.1\| At1g48640/F11I4_17 [Arabidopsis thaliana] gb\|AAM70527.1\| At1g48640/F11I4_17 [Arabidopsis tha	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome organization	GO:0007031	Biological Process	0.0	61%
Blast2go	integral to peroxisomal membrane	GO:0005779	Cellular Component	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peroxin-3	IPR006966	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPM6

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 87 - 375

Fln protein: CKHLREPLTVGELYDIFRRILNNFPSSSLHWINYVIPENGLLYQELSTGTSTFGVSQLPRAVLSPFETERAKLEQLMAETRDVLLRH

Protein Length: 88

Fln nts: AATGTAAGCATTTAAGGGAGCCCTTAACTGTTGGTGAATTATATGATATTTTTAGAAGAATACTGAACAATTTTCCAAGCAGTTCATTGCACTGGATAAATTATGTAATTCCAGAGAACGGATTGTTGTATCAAGAGCTTTCAACTGGTACCTCAACCTTTGGTGTTTCTCAATTGCCACGTGCGGTTCTTAGTCCCTTTGAAACTGAGAGGGCAAAGCTAGAGCAGTTGATGGCAGAGACTCGTGATGTTTTGTTAAGACATT

Fln Alignment:

biogeco3_mira_c11367___KHLREPLTVGELYDIFRRILNNFPSSSLHWINYVIPENGLLYQELSTGTSTFGVSQLPRAVLSPFETERAKLEQLMAETRDVL
B8LPM6__________________KHLREPLTVGELYDIFRRILNNFPSSSLQWINYVIPENGLLYQELSSGTSTFGVSQLPRAVLSPFETERAKLEQLMAETRDVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain