SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene15600

Length: 419 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene15600
AGAACTGAATGATGAGAGAAACTGGAGGAGTGGTCTTCGAGTGCGATTGTTACTTCGACGAGTGAGCAAGTCCGTTCATCAGACTAAAGTACGAAAAGCAGCAACTGAAAATATTGATAGTAATGGTGAAGAAGAGGAGGTATCCACATCCGAAGCAGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGTCATGAGTTTATGGGTGATGAACAGCACTCATCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGCCGTGTTCAACTTAGTGTTGGGCGTAGTCATCCAGTTGGCCCACCACAATGCTCTAGTTCCTCTATCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGGACACGGGGCTTCACCATGGGCC

Ace file of the UniGene biog3_v1.0_unigene15600 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27697	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein [Arabidopsis thaliana] gb\|AAK52994.1\|AF375410_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb\|AAK56266.1\|AF367277_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb\|AAK06847.1\| VirF-interacting protein FIP1 [Arabidopsis thaliana] gb\|AAL0708	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	lupus la	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Lupus La protein	IPR002344	-	-
Sma3	RNA-binding protein Lupus La	IPR006630	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9S8

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 139 - 461

Fln protein: ELNDERNWRSGLRVRLLLRRVSKSVHQTKVRKAATENIDSNGEEEEVSTSEAVNDKQFEDSPHQSERHEFMGDEQHSSEGGRRGRGRGWGRGRGRVQLSVGRSHPVGPPQCSSSSIIEVQGKQPPGPRMPDGTRGFTMG

Protein Length: 140

Fln nts: AGAACTGAATGATGAGAGAAACTGGAGGAGTGGTCTTCGAGTGCGATTGTTACTTCGACGAGTGAGCAAGTCCGTTCATCAGACTAAAGTACGAAAAGCAGCAACTGAAAATATTGATAGTAATGGTGAAGAAGAGGAGGTATCCACATCCGAAGCAGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGTCATGAGTTTATGGGTGATGAACAGCACTCATCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGCCGTGTTCAACTTAGTGTTGGGCGTAGTCATCCAGTTGGCCCACCACAATGCTCTAGTTCCTCTATCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGGACACGGGGCTTCACCATGGGCC

Fln Alignment:

biogeco3_mira_c11261___ELNDERNWRSGXXXXXXXXXVSKSVHQTKVRKAATENIDSNGEEEEVS-TSEAVNDKQFEDSPHQSERHE-FMGDEQHSSEXXXXXXXXXXXXXXXRVQLSV---GRSHPVGPPQCSSSSIIEVQGKQPPGPRMPDGTRGFTMG
D5A9S8__________________DLNDGGNWRSGLQVQLLLKRMGKYGHQTKGRQS--DNADVHGEEEDANNTSDTGNDKQSKVTTQHSDRHDDFEGDAHYPNEKNGGRKGRGRGRGKPRGRGQYHGNGRGHPLNTASTSSSSSGEVVVKQPPGPRMPDGTRGFTMG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
65	33	66			0.997452
66	33			66	0.997452
68		66	33		0.997452
69	66			33	0.997452
107	33		66		0.997452
182	33	66			0.997455
188		33	66		0.997464
190	33	33		33	0.997752
191			66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain